Gracilinema caldarium: Spica_2105
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Entry
Spica_2105 CDS
T01573
Name
(GenBank) ABC-type transporter, periplasmic subunit
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
scd
Gracilinema caldarium
Pathway
scd02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Spica_2105
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scd02000
]
Spica_2105
Transporters [BR:
scd02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
Spica_2105
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Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Motif
Other DBs
NCBI-ProteinID:
AEJ20230
UniProt:
F8F0U4
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All DBs
Position
2369952..2371694
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AA seq
580 aa
AA seq
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MKASHVLYISFITIIMVTSCISNKNGIIVPAPPQTSSTSDRSETPETKNEMQGTIENSPD
QHLTPLAEGRPDPQNKEELTVVFSSGSVEFDPRKSFLASEAQLFTALYEGLFSYNPLTLE
PIPAVAESWKLSDDKKTWTFTLRSTARYWNGDKLTSQHFRDAWISLLDPAGNNPYSSLFD
IIVGAKEYRTGQNKDSKEVGIECPDEKTLIVHLNAPAAFFPSMLCHHSFSPIHPNMIGIT
DWSKQVPISNGPYYLVEQHKDRLVLAKNELYWDSKRVALKKLIIRFTQDGEEAASLWNSG
EARWIAGDVNLEALQDRSGIVVNAMFATYYFYIRSSRSPWNDSRVRQALSLTLPWDAIRQ
GYYLPAETLIYPIPGYPKPKGLTETNLEKAQQLLKEAGFPKGVGMPTLVIKISQSKEAYR
IASIMASAWKDGLGVPVDIKVTSYDSYLDELKKDDYVVGSSTWIGDFADPYTFLQMWRWD
SNLNDARFHDPVYENLIDQSMKEEGEVRWQTLSRAEEQLLQGGTVLPIAYTPALNIIDMN
EIDGWYPNPLDIHPFKYLVYATFRALPGVAWGPIHQNNNL
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcatcacatgtactttatatttcgtttataacaattattatggtaacttcctgt
atttcaaataagaacggaataatagtaccagctcctccacagacaagtagcacctcagat
cgttcagaaactcctgaaacaaagaacgaaatgcaaggtactatagaaaatagtcccgac
cagcatctaactcccttggcagaggggaggcctgaccctcagaataaggaagagcttacc
gttgttttctcatctgggtctgtcgaatttgaccctcggaaatcattcctcgcttcggaa
gctcaactatttaccgccctgtatgagggactcttttcctacaatccgttaacccttgaa
ccgattcccgcggtggctgaatcctggaaactttcagatgataagaagacctggactttt
accctgcgcagtactgcccggtattggaatggggacaaacttacatcacaacatttccga
gatgcctggatttcgctgctcgatccagcgggaaacaacccctattcttccttgtttgat
ataatcgtcggtgccaaggaatatcgaactggacaaaacaaggattctaaagaggttggc
atagaatgccctgatgaaaaaacgcttatcgtacatctgaatgcaccggcagcctttttc
cccagcatgctctgtcatcattcctttagccctattcatccaaacatgataggaattacc
gattggtcaaaacaggttcctatctcaaacggaccttactatcttgttgaacaacataaa
gaccgtcttgtccttgcaaaaaatgagctctattgggattcaaaacgggttgctctaaaa
aaactaattatccgctttacccaggatggagaggaagcagccagtctctggaattctggg
gaagccagatggattgctggtgacgtgaacctggaagcccttcaggaccgcagtggtatt
gtggtaaacgcaatgtttgccacctattatttctatatccgttcttctagatccccatgg
aatgacagccgtgtccgtcaggccttaagccttacattaccctgggatgctattagacag
ggctactaccttcccgcagaaacccttatttatcctattccagggtaccctaaaccaaag
ggattaacagaaacaaaccttgaaaaggcacaacaactacttaaagaagcaggatttccc
aaaggggttggtatgcctaccctcgttattaagatcagccagtcaaaagaagcatatcgt
attgcaagcatcatggcttcggcatggaaagatggtctaggtgtaccggtcgatattaaa
gttacttcctatgactcctatcttgatgagttaaaaaaagatgattatgtggttggttct
tctacctggattggtgattttgcagacccctatacctttctccagatgtggcgctgggat
tccaatttaaatgatgccagattccatgatccggtttatgaaaaccttatagaccagtct
atgaaagaagaaggagaggtccgctggcagaccctgtctagggcggaagaacaacttctg
caaggtggtaccgtgcttcctattgcttataccccagccctgaacatcatcgacatgaac
gaaatagatggctggtaccccaatccgctggacattcatccctttaaatacctggtctat
gcaacatttagagcgcttcccggagtagcatggggacctattcaccaaaataataattta
tga
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