Gracilinema caldarium: Spica_2543
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Entry
Spica_2543 CDS
T01573
Name
(GenBank) type III restriction protein res subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
scd
Gracilinema caldarium
Pathway
scd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Spica_2543
09124 Replication and repair
03420 Nucleotide excision repair
Spica_2543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scd03021
]
Spica_2543
03400 DNA repair and recombination proteins [BR:
scd03400
]
Spica_2543
Enzymes [BR:
scd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spica_2543
Transcription machinery [BR:
scd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Spica_2543
DNA repair and recombination proteins [BR:
scd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Spica_2543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AEJ20646
UniProt:
F8EXY5
LinkDB
All DBs
Position
complement(2880801..2882603)
Genome browser
AA seq
600 aa
AA seq
DB search
MANPANPLIIQSDRTLLMDVHAEGAEEARSAIMPFAELVKSPEHIHTYQITPLSLWNAAS
AGLSPQDIQRVLEAYSRYPVPRNILEGFADTMARYGKIKLVAPEHPPQQAPEQAPPQAVP
QQTASQAGTGPGSNSATTPAECSAGAQTDTLLLLCESEPIRAEVAAAKSLAKYLIPDGPA
FRLKLVDRGTVKRELIKLGWPVQDLAPLAAGEPLEINFRTTTSGGKPFAPRDYQVEAARS
VVGDGGPGSGFGVVVLPCGSGKTVVGMTVMTMLKTNTLILTTNVAAVHQWIDELLDKTDL
TAEQIAEYTGDEKSVAPVTVATYQILTWRPNKDADFPHFKLFRERAWGLIIYDEVHMLPA
PVFRVTAELQAVRRLGLTATLVREDGAEDAVFSLVGPKRYDVPWKDLEAKGWIAEALCTE
IRLDLPEQLKIPYAVANQRAKYRIASENPLKIAVVQQLIENHPEDRILVIGQYLSQLSEL
ARILKVPLITGQTPHAEREVIYHRFKQGELRLIVVSKVANFAIDLPDASMAIQVSGSFGS
RQEEAQRLGRILRPKNRNSYFYTIVSRFTVEEEFAANRQKFLAEQGYKYTIQHWTEDELS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcctgcgaacccgttaattatccagagtgaccgaaccctgcttatggatgta
catgccgaaggggctgaagaagcccgttcggccattatgccctttgcagagctggtaaag
tcccctgaacatatacatacctatcagattactcccctttccctgtggaatgcggccagc
gcgggcttgagcccccaggatattcagcgggtcctcgaagcatactcccgctatccggta
ccgcggaatatcctcgaaggttttgcggataccatggcccgctacgggaaaattaagctg
gtggcccccgagcaccccccccagcaagcccccgagcaggccccaccacaggccgtcccc
cagcagactgcctcgcaggctggcacaggccccggcagcaattccgcaacaacacctgca
gaatgctccgccggggctcagaccgataccctgctgctgctttgcgagagtgaacccatc
cgggcagaagttgccgccgctaaaagtctcgccaaatacctcatccccgatggtcccgcc
ttcaggctcaaacttgtagaccggggtaccgtaaaacgagaactgatcaaactgggctgg
cccgtgcaggacctggcgccccttgccgcaggggaacccctggaaatcaacttccggacc
accaccagcggcggtaaaccctttgctccccgggattaccaggtagaagccgcccgctcg
gtagtcggagacggcggcccaggctcaggttttggggtcgtggtcttgccctgcggatcc
ggcaagacggtggtcggtatgaccgtcatgactatgctgaaaaccaacaccctcattctc
accaccaacgtagcagcggtccatcagtggattgatgaacttctggataaaaccgatctg
acagccgaacagattgccgaatatacgggggatgaaaaatctgtagcccccgttacagtg
gctacctatcaaatcttaacatggcgccccaacaaggacgccgatttccctcattttaag
cttttccgtgaacgggcctggggacttatcatatatgacgaggtgcatatgctcccggca
ccggtgttccgggtgacagcagaactgcaggcggtgcgtcggctgggcctcaccgccacc
ctggtccgggaagatggggcagaggacgccgtctttagtctcgtggggccgaaacgctac
gatgtcccctggaaggatctggaagccaaaggctggattgcagaagccctctgcacggaa
atccggctggatctgccggaacagctaaaaattccctatgcagtggccaatcagcgggca
aaatatcgcatcgccagcgaaaacccccttaaaatcgccgtggttcagcagttgatcgaa
aatcaccccgaagatcggatactcgtcattggccagtacctgtctcagctgtcggagctc
gcccgcatcctcaaggttcccctcattaccggtcagactccccatgcagaacgggaagta
atctatcatcgctttaagcaaggcgaactccggcttatcgtcgtatccaaggtagccaat
tttgccatcgacctccccgatgcatccatggccatccaggtgtccggttccttcggctcc
cggcaggaagaagcccagcggctcggtcgaatcctgcgtcccaaaaaccggaactcctat
ttttataccattgtctcccgttttactgtagaagaggaattcgccgccaaccggcagaaa
ttcctcgctgaacagggctataaatacaccattcagcattggaccgaagatgaactcagt
tag
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