KEGG   Saccharomyces cerevisiae (budding yeast): YBR154C
Entry
YBR154C           CDS       T00005                                 
Symbol
RPB5
Name
(RefSeq) DNA-directed RNA polymerase core subunit RPB5
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03020  RNA polymerase
sce03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    YBR154C (RPB5)
  09124 Replication and repair
   03420 Nucleotide excision repair
    YBR154C (RPB5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sce03021]
    YBR154C (RPB5)
   03400 DNA repair and recombination proteins [BR:sce03400]
    YBR154C (RPB5)
Transcription machinery [BR:sce03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     YBR154C (RPB5)
  RNA polymerase III system
   RNA polymerase III
     YBR154C (RPB5)
  RNA polymerase I system
   RNA polymerase I
     YBR154C (RPB5)
DNA repair and recombination proteins [BR:sce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      YBR154C (RPB5)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat SH3_2
Other DBs
NCBI-GeneID: 852451
NCBI-ProteinID: NP_009712
SGD: S000000358
UniProt: P20434
Structure
LinkDB
Position
II:complement(548362..549009)
AA seq 215 aa
MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSF
QANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSA
MKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQR
ADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM
NT seq 648 nt   +upstreamnt  +downstreamnt
atggaccaagaaaatgaaagaaacatctcaagattatggagagcattcagaacagtaaaa
gaaatggttaaggacaggggttattttatcactcaagaggaagtcgaattgccattggaa
gatttcaaggccaagtattgtgactccatgggcagaccacaacgtaaaatgatgtccttc
caggcaaatccaacagaagaatctatatcaaagttcccagacatgggctccttatgggta
gaattttgtgatgagccttccgttggtgtaaagacaatgaagacttttgttatacatatt
caagaaaaaaatttccaaacaggtatctttgtttaccaaaataatattacaccaagtgca
atgaaattggtgccttctataccaccagccaccattgaaacttttaatgaagctgcctta
gtggttaatattactcaccacgaattggttccaaagcatatcagattgagtagtgatgag
aaaagagagcttttaaaaaggtatagattgaaggaatcccaattgccaagaattcaaaga
gctgatcctgtagccttatacttgggattgaaaagaggcgaagtagttaaaatcataaga
aaaagtgaaacctctggtcgttatgccagttacagaatctgtatgtag

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