KEGG   Saccharomyces cerevisiae (budding yeast): YBR223C
Entry
YBR223C           CDS       T00005                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    YBR223C (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sce03400]
    YBR223C (TDP1)
DNA repair and recombination proteins [BR:sce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     YBR223C (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho PLDc_2
Other DBs
NCBI-GeneID: 852525
NCBI-ProteinID: NP_009782
SGD: S000000427
UniProt: P38319
Structure
LinkDB
Position
II:complement(668663..670297)
AA seq 544 aa
MSRETNFNGTKRKRSDVAEKVAQRWKSVRYSAEMENMAPVNSNNDSDDCVIVSESKIIDL
TNQEQDLSERIETNDTAKGAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILF
SFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAMDATLAVILKKVKLIEITMPPFAS
HHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWCSPLLKIGKEGLPVPFKRSLIEY
LNSYHLKDIDELITKSVEEVNFAPLSELEFVYSTPSKFQSSGLLSFYNKLEKLSAGTSAS
DTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLI
NEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPA
MVTRRRGTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRN
YEAGVLYHSRRLANTRKVTCRTFTRDRRGCAGNPTHVAVPFTLPVIPYDLAEDECFCLAR
HEND
NT seq 1635 nt   +upstreamnt  +downstreamnt
atgtcacgagaaacaaatttcaatggaactaagaggaagaggtcggatgttgccgagaaa
gtagcacaacggtggaagagcgtcaggtatagtgctgaaatggagaatatggctccggtc
aacagtaacaatgatagcgacgactgcgtcatagtcagtgaatcgaaaatcattgatttg
actaatcaggaacaagatttgagtgagagaatagaaacaaacgatacggcaaaaggtgcc
gtttttaaactaatgaaatcggacttctatgaaagagaggattttatgggagaagtagag
gatatgattacattgaaagatatctttggcactgagacactaaaaagaagcatactcttc
agtttccaatacgaacttgatttcttgttgagacaattccaccagaacgtagagaacata
accatcgtcggccaaaagggtactattatgcctatcgaagcccgtgctatggacgcgaca
ctggcagtaatattaaaaaaggtcaaacttattgaaataacgatgcccccattcgcttcc
caccatacgaagctgatcataaacttttacgataatggcgaatgcaaaatattcttgcca
tctaacaattttacgtcaatggagactaacctgcctcaacaggtgtgttggtgcagtccc
cttttgaaaataggtaaagaagggctaccagtaccgtttaagagaagcttgatagaatac
ctcaattcgtaccacctgaaagacattgacgaattgattacaaaaagcgtagaggaagtt
aactttgctcctttgagcgaattagaatttgtatattctacgccctccaaatttcagtcg
tcgggtttactgtcgttttacaataaactagaaaaactttctgctggcacaagtgctagt
gatactgcaaaacattatctatgtcaaacttcatccatagggacatctctatcaagagcg
cgagacgaaaacttatggacacatctaatgattcctctgtttaccggaatcatgtcccct
ccagcaaaggacaccgctgggaggaagaaagcagaaatactgccaacgaattcattgatt
aatgaatattcgcagagaaaaatcaagccgtacattattttccccaccgaacaagagttt
gtcaccagtcccttaaagtggtccagttccgggtggtttcattttcaatatcttcagaaa
aagagctactacgaaatgctgcgaaacaagttcaaagtattttacaagcaagaccctgct
atggttactagaagacgagggacgacgcccgcgcactctaagttttacatgcattgtgca
acaaactccgcagggccctgtgatgcatcgcaggtatttaaagaactagaatggtgcctt
tatacttcggcaaacctcagccaaacagcatggggcaccgtttcaagaaaaccacgcaat
tatgaagcaggagtgctttaccatagtcgcaggttagcaaataccaggaaggtcacgtgc
cgtacttttacacgtgaccgtagaggctgcgcgggtaatcccacccatgtggccgtgcca
ttcacgctgccagtcataccatacgacttagctgaggacgagtgcttttgccttgctcgt
catgagaacgactaa

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