Saccharomyces cerevisiae (budding yeast): YCR077C
Help
Entry
YCR077C CDS
T00005
Symbol
PAT1, MRT1
Name
(RefSeq) Pat1p
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YCR077C (PAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YCR077C (PAT1)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
YCR077C (PAT1)
mRNA degradation factors
5'-3' decay
Decapping complex
YCR077C (PAT1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Med4
Motif
Other DBs
NCBI-GeneID:
850440
NCBI-ProteinID:
NP_010002
SGD:
S000000673
UniProt:
P25644
Structure
PDB
PDBj
LinkDB
All DBs
Position
III:complement(250238..252628)
Genome browser
AA seq
796 aa
AA seq
DB search
MSFFGLENSGNARDGPLDFEESYKGYGEHELEENDYLNDETFGDNVQVGTDFDFGNPHSS
GSSGNAIGGNGVGATARSYVAATAEGISGPRTDGTAAAGPLDLKPMESLWSTAPPPAMAP
SPQSTMAPAPAPQQMAPLQPILSMQDLERQQRQMQQQFMNFHAMGHPQGLPQGPPQQQFP
MQPASGQPGPSQFAPPPPPPGVNVNMNQMPMGPVQVPVQASPSPIGMSNTPSPGPVVGAT
KMPLQSGRRSKRDLSPEEQRRLQIRHAKVEKILKYSGLMTPRDKDFITRYQLSQIVTEDP
YNEDFYFQVYKIIQRGGITSESNKGLIARAYLEHSGHRLGGRYKRTDIALQRMQSQVEKA
VTVAKERPSKLKDQQAAAGNSSQDNKQANTVLGKISSTLNSKNPRRQLQIPRQQPSDPDA
LKDVTDSLTNVDLASSGSSSTGSSAAAVASKQRRRSSYAFNNGNGATNLNKSGGKKFILE
LIETVYEEILDLEANLRNGQQTDSTAMWEALHIDDSSYDVNPFISMLSFDKGIKIMPRIF
NFLDKQQKLKILQKIFNELSHLQIIILSSYKTTPKPTLTQLKKVDLFQMIILKIIVSFLS
NNSNFIEIMGLLLQLIRNNNVSFLTTSKIGLNLITILISRAALIKQDSSRSNILSSPEIS
TWNEIYDKLFTSLESKIQLIFPPREYNDHIMRLQNDKFMDEAYIWQFLASLALSGKLNHQ
RIIIDEVRDEIFATINEAETLQKKEKELSVLPQRSQELDTELKSIIYNKEKLYQDLNLFL
NVMGLVYRDGEISELK
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtccttctttgggttagaaaatagcggtaatgcgcgggatggtcctctggactttgaa
gagagttacaagggctatggcgagcacgaacttgaggagaacgactatttgaacgacgaa
acatttggtgataatgttcaggttggtaccgactttgattttggaaatcctcacagcagc
ggcagcagcggcaacgcaattggtggtaatggcgtcggtgccacggctagatcatatgtt
gcagctactgcagaaggaattagcggccctaggaccgatggaacggcagcagcaggacct
ctagacctgaagccaatggaatctttgtggtctactgcaccacctccagcaatggcgcct
tcaccccaaagtacaatggctccggctcctgctccgcagcaaatggcccccctacagcca
atcttgtcgatgcaagacttggaaagacaacaacgtcaaatgcagcaacagtttatgaat
ttccacgccatgggtcatccacagggtctcccacagggtccgcctcagcagcaatttcca
atgcagcctgcgtcgggtcaaccaggtccctcacaatttgcgcctccacctccacctcct
ggcgttaatgtgaatatgaatcaaatgccaatgggtcctgtacaagttccagttcaagct
tcgccttcacccatcggtatgtccaacactccttctccaggccctgtggttggcgcaact
aaaatgcctctgcaaagtggacgcagatcgaagagagatttgtcgcctgaagagcaaaga
cgtttgcagattcgtcatgccaaagtggagaaaatcttgaaatactcaggtttaatgact
cctcgtgataaggacttcatcaccagatatcagttgtctcaaattgtcactgaggaccct
tacaatgaggatttctacttccaggtctacaagattatccaaagaggcggtatcacgtcc
gaatccaacaaaggtttgattgctagggcgtatttggaacattctggacacagactcggt
ggtcgctataagagaaccgatattgccctacagagaatgcaaagtcaagtagaaaaggct
gtcactgtggctaaggaaagaccttctaagttgaaggatcaacaagcggctgctggtaac
tctagccaggataataagcaagcaaacacggttctgggcaaaatctcttccactttgaac
agcaagaatccaagaagacaactgcagatccccagacaacagccttctgaccccgatgcg
ctaaaagacgtcactgactctctgaccaacgtggacttggcctcttcagggtcctcctct
acgggctcttctgccgctgctgttgcttctaagcaaagaagaagatcttcatacgcgttc
aacaacggtaatggtgccacaaatttgaacaaatctgggggcaaaaaattcattcttgag
ttaattgaaacagtttatgaagagattttagacttggaagctaacttgaggaatggccag
caaactgacagcactgcaatgtgggaggcccttcacatcgacgacagttcatatgacgta
aaccctttcatttcgatgctatcatttgataaaggtatcaagattatgcctagaattttt
aatttcttggataagcagcaaaaattgaaaatcctgcaaaaaatcttcaatgaattatca
cacttgcaaatcatcatattgagttcctacaagactacaccaaaaccaactttgacacaa
ttgaagaaagtcgatctgttccaaatgatcatattaaagatcattgtctcgtttttgtct
aataactccaattttatcgaaattatgggtctgttgctacagttaatcagaaacaacaac
gtttcgttcttgaccacctccaaaattggtctaaatttgatcaccattttgatttctcgt
gccgcattaatcaagcaagattcatcaagatctaatattctttcctctcctgaaatctcc
acatggaatgagatttatgataaattattcacttcattggaaagtaagattcagctgatt
ttccctccaagggaatataacgaccacatcatgcgtttacaaaatgacaagtttatggat
gaagcatacatttggcagttcctagctagtttagcactaagtggaaagctaaaccaccag
agaatcattattgatgaagtacgtgatgaaatctttgccactattaacgaggcggagacc
ttacaaaagaaagagaaagaattgagtgtattacctcagaggtctcaagaattagacaca
gagttaaaatctattatttataataaagagaaactataccaagatttgaatttgttccta
aacgttatggggttggtgtatcgcgatggtgaaatatcagaactaaagtaa
DBGET
integrated database retrieval system
