Saccharomyces cerevisiae (budding yeast): YDL084W
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Entry
YDL084W CDS
T00005
Symbol
SUB2
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
3.6.4.13
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03013
Nucleocytoplasmic transport
sce03015
mRNA surveillance pathway
sce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
YDL084W (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
YDL084W (SUB2)
03015 mRNA surveillance pathway
YDL084W (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YDL084W (SUB2)
03041 Spliceosome [BR:
sce03041
]
YDL084W (SUB2)
Enzymes [BR:
sce01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
YDL084W (SUB2)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
YDL084W (SUB2)
Spliceosome [BR:
sce03041
]
Complex C
Other components
EJC/TREX
YDL084W (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
YDL084W (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
851475
NCBI-ProteinID:
NP_010199
SGD:
S000002242
UniProt:
Q07478
Structure
PDB
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All DBs
Position
IV:305237..306577
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AA seq
446 aa
AA seq
DB search
MSHEGEEDLLEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIH
STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST
LQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKN
KDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRD
KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQL
LDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRIC
VSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLA
KIQERFDVKIAEFPEEGIDPSTYLNN
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgaaggtgaagaagatttattggagtactccgataacgaacaagaaattcaa
attgatgcctctaaggccgctgaagctggagaaactggcgccgccacttctgcaactgaa
ggtgataataataacaacactgcagctggcgacaagaaaggttcctatgttggtatccat
tccaccggtttcaaagatttcttgctaaagccagaactatcaagagccatcattgactgt
ggttttgaacatccttctgaggtccagcaacataccattcctcagtcaattcatggtacc
gatgtcttgtgtcaagcaaagtctggtttaggtaagacagctgtctttgtcttatccact
ctgcaacaattggaccctgttccaggtgaagttgccgttgttgtcatttgtaatgctaga
gaactggcctatcaaattcgtaacgagtatttgagattttccaaatatatgccagacgtt
aagacagcagtcttttacggtggtactccaatttctaaggatgctgaacttttaaagaat
aaagatactgctcctcacattgttgttgcaactccaggtcgtttaaaagcgttagtgaga
gaaaaatacattgatttgtcacacgtcaagaactttgtcatagatgaatgtgataaggtt
ttagaagaattagacatgagaagagatgtgcaagaaattttcagagctactccaagagac
aaacaagtcatgatgttttcagccacactttctcaagaaattagaccaatttgtagacgc
ttcttacagaatccattggaaattttcgtcgatgatgaagctaagctaaccttgcacggg
ttgcaacaatattatatcaaattagaagaacgtgaaaagaaccgtaaattggctcaatta
ttagatgatttggagttcaatcaagtcattattttcgttaaatctaccacaagagctaat
gagttgaccaaactattaaacgcctctaactttccggctatcaccgttcatggtcatatg
aaacaagaagaacgtattgctcgttacaaggctttcaaagattttgaaaaacgtatttgc
gtgtccacagatgtttttggtagaggtatcgatattgaacgtattaatttagccatcaat
tacgatttgactaatgaagctgaccaatatttacatcgtgtcggtagagctggtagattt
ggtactaagggtttggctatttcattcgtttcttcaaaggaagatgaggaagtcttggct
aagatccaagagcgtttcgatgtcaaaatcgctgaattcccagaagaaggcattgatccg
tccacttatttgaataattaa
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