Saccharomyces cerevisiae (budding yeast): YDL126C
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Entry
YDL126C CDS
T00005
Symbol
CDC48
Name
(RefSeq) AAA family ATPase CDC48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
YDL126C (CDC48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YDL126C (CDC48)
03009 Ribosome biogenesis [BR:
sce03009
]
YDL126C (CDC48)
04131 Membrane trafficking [BR:
sce04131
]
YDL126C (CDC48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sce04147
]
YDL126C (CDC48)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
YDL126C (CDC48)
Ribosome biogenesis [BR:
sce03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
YDL126C (CDC48)
Membrane trafficking [BR:
sce04131
]
SNARE
SNARE associated proteins
Others
YDL126C (CDC48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
YDL126C (CDC48)
Exosome [BR:
sce04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
YDL126C (CDC48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_5
AAA_2
AAA_33
TIP49
CDC48_2
AAA_22
AAA_14
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
AAA_17
ATPase
Parvo_NS1
AAA_7
IstB_IS21
AAA_24
AAA_25
Vps4_C
NPHP3_N
AAA_18
ABC_tran
Sigma54_activat
DUF815
ResIII
PhoH
SLFN-g3_helicase
KAP_NTPase
Motif
Other DBs
NCBI-GeneID:
851431
NCBI-ProteinID:
NP_010157
SGD:
S000002284
UniProt:
P25694
Structure
PDB
PDBj
LinkDB
All DBs
Position
IV:complement(236157..238664)
Genome browser
AA seq
835 aa
AA seq
DB search
MGEEHKPLLDASGVDPREEDKTATAILRRKKKDNMLLVDDAINDDNSVIAINSNTMDKLE
LFRGDTVLVKGKKRKDTVLIVLIDDELEDGACRINRVVRNNLRIRLGDLVTIHPCPDIKY
ATRISVLPIADTIEGITGNLFDVFLKPYFVEAYRPVRKGDHFVVRGGMRQVEFKVVDVEP
EEYAVVAQDTIIHWEGEPINREDEENNMNEVGYDDIGGCRKQMAQIREMVELPLRHPQLF
KAIGIKPPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAF
EEAEKNAPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRP
NSIDPALRRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEALAAETHGYVGAD
IASLCSEAAMQQIREKMDLIDLDEDEIDAEVLDSLGVTMDNFRFALGNSNPSALRETVVE
SVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKA
VATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSL
GDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDE
NARLSILNAQLRKTPLEPGLELTAIAKATQGFSGADLLYIVQRAAKYAIKDSIEAHRQHE
AEKEVKVEGEDVEMTDEGAKAEQEPEVDPVPYITKEHFAEAMKTAKRSVSDAELRRYEAY
SQQMKASRGQFSNFNFNDAPLGTTATDNANSNNSAPSGAGAAFGSNAEEDDDLYS
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagaacataaaccacttttggacgcctcgggtgtcgaccctcgtgaggaggat
aaaaccgccaccgccattttaagaagaaagaagaaggacaacatgcttttggtggacgat
gctatcaatgatgacaattctgtcattgctattaattctaacaccatggacaaattggaa
ttgttccgtggtgacaccgttctcgttaagggcaagaagagaaaagatactgtcttaatt
gtgttgatcgatgacgaattagaagacggagcatgcaggataaaccgtgtagttcgtaac
aatttacgtattaggctgggtgatttagttacaattcatccttgccccgatatcaaatac
gctactagaatttctgtgttaccaattgctgatacgatcgaaggtataactggtaatctt
ttcgatgtttttttgaagccttattttgtggaagcctacagaccagtgaggaaaggcgac
cattttgttgtcagaggcggtatgagacaagtcgaattcaaggttgtggatgtcgaacct
gaagaatatgccgtcgttgctcaggatactattattcactgggaaggtgagccaatcaac
agggaagatgaagaaaataatatgaatgaggtgggttacgatgatattggtggttgtcgt
aagcaaatggctcaaattagggaaatggttgaactaccattgagacatcctcagttgttc
aaggctatcggtatcaagccaccaagaggtgttttgatgtatggtccccctggtactggt
aaaaccttgatggcaagagctgttgctaatgagaccggtgccttttttttcttaattaat
ggtccagaagtcatgtcaaaaatggctggtgaatcagagtctaacttaagaaaggccttt
gaagaagccgaaaagaacgctccagccatcatttttatcgatgaaatcgattctatagct
ccaaagagagacaagactaatggtgaagttgagagaagagttgtctctcaattgttaact
ttaatggatggtatgaaggcaagatctaatgttgttgtcattgctgctaccaatagacca
aattcgattgatcccgctttaagaagatttggtagattcgatcgtgaagtcgacattggt
atcccagatgctacaggtagacttgaagttctacgtattcacaccaagaacatgaagttg
gctgatgatgttgatttggaagcattggctgctgaaacacacggttacgtgggtgctgat
attgcctctttgtgttctgaagctgccatgcaacagatccgtgaaaaaatggacttgata
gatttagatgaagatgaaattgatgcagaggtgctcgattctttaggagtcaccatggac
aacttcagattcgcattgggcaattcaaacccatctgcattgcgtgaaaccgttgttgaa
agtgtcaatgttacttgggatgacgttggtggcctagatgaaatcaaggaggaattgaag
gaaactgtagaatacccagtcttacatccagaccaatacacaaagtttgggttatcacca
tcaaagggtgtgttgttctacggtccaccaggtacaggtaaaactttgttagcaaaagct
gtagctactgaggtttctgccaactttatctcagtcaaaggtccagaattattgagtatg
tggtatggtgaatcggaatctaacatccgtgatatttttgataaggcaagagcagctgca
ccaaccgtcgtttttctagatgaattagactccattgccaaggcaagaggtggttccttg
ggtgatgctggtggtgcttcggatagagtcgtcaaccaactattaacagaaatggatggt
atgaatgctaagaaaaatgtgttcgtgattggtgccaccaataggccagatcaaattgat
cctgctattttaagacctggcagattggatcaattaatttatgttccattgccagatgaa
aacgctagattatctattctaaatgctcaattaaggaaaacaccactagaaccagggcta
gagttaactgcgattgccaaggccactcaaggtttctctggtgctgatttactctatatt
gtgcagagggctgctaaatacgctatcaaggattctatcgaagctcacagacaacacgaa
gctgaaaaggaagtgaaagtagaaggtgaagacgtggaaatgacagatgagggagcaaag
gctgaacaagaaccagaagtagatcctgttccatatattacaaaggagcatttcgcagaa
gctatgaagaccgctaaacgttctgtttcagatgctgaattgcgtcgttatgaagcatac
tcacagcaaatgaaagcatctagaggtcaattcagtaatttcaactttaatgacgctcca
ttaggtactacggctacggacaatgctaacagtaataatagtgctccaagtggagcaggt
gctgcatttggttctaatgcggaggaagatgatgatttgtatagttag
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