KEGG   Saccharomyces cerevisiae (budding yeast): YDL164C
Entry
YDL164C           CDS       T00005                                 
Symbol
CDC9, MMS8
Name
(RefSeq) DNA ligase (ATP) CDC9
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03030  DNA replication
sce03410  Base excision repair
sce03420  Nucleotide excision repair
sce03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YDL164C (CDC9)
   03410 Base excision repair
    YDL164C (CDC9)
   03420 Nucleotide excision repair
    YDL164C (CDC9)
   03430 Mismatch repair
    YDL164C (CDC9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sce03032]
    YDL164C (CDC9)
   03400 DNA repair and recombination proteins [BR:sce03400]
    YDL164C (CDC9)
Enzymes [BR:sce01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     YDL164C (CDC9)
    6.5.1.6  DNA ligase (ATP or NAD+)
     YDL164C (CDC9)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     YDL164C (CDC9)
DNA replication proteins [BR:sce03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    YDL164C (CDC9)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     YDL164C (CDC9)
DNA repair and recombination proteins [BR:sce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     YDL164C (CDC9)
   NER (nucleotide excision repair)
    Other NER factors
     YDL164C (CDC9)
   MMR (mismatch excision repair)
    Other MMR factors
     YDL164C (CDC9)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 851391
NCBI-ProteinID: NP_010117
SGD: S000002323
UniProt: P04819
Structure
LinkDB
Position
IV:complement(164987..167254)
AA seq 755 aa
MRRLLTGCLLSSARPLKSRLPLLMSSSLPSSAGKKPKQATLARFFTSMKNKPTEGTPSPK
KSSKHMLEDRMDNVSGEEEYATKKLKQTAVTHTVAAPSSMGSNFSSIPSSAPSSGVADSP
QQSQRLVGEVEDALSSNNNDHYSSNIPYSEVCEVFNKIEAISSRLEIIRICSDFFIKIMK
QSSKNLIPTTYLFINRLGPDYEAGLELGLGENLLMKTISETCGKSMSQIKLKYKDIGDLG
EIAMGARNVQPTMFKPKPLTVGEVFKNLRAIAKTQGKDSQLKKMKLIKRMLTACKGIEAK
FLIRSLESKLRIGLAEKTVLISLSKALLLHDENREDSPDKDVPMDVLESAQQKIRDAFCQ
VPNYEIVINSCLEHGIMNLDKYCTLRPGIPLKPMLAKPTKAINEVLDRFQGETFTSEYKY
DGERAQVHLLNDGTMRIYSRNGENMTERYPEINITDFIQDLDTTKNLILDCEAVAWDKDQ
GKILPFQVLSTRKRKDVELNDVKVKVCLFAFDILCYNDERLINKSLKERREYLTKVTKVV
PGEFQYATQITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKD
YLEGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGEFETCCKIGTGFSDEMLQLL
HDRLTPTIIDGPKATFVFDSSAEPDVWFEPTTLFEVLTADLSLSPIYKAGSATFDKGVSL
RFPRFLRIREDKGVEDATSSDQIVELYENQSHMQN
NT seq 2268 nt   +upstreamnt  +downstreamnt
atgcgcagattactgaccggttgccttctttcatctgcacgtcccttgaaatcaagattg
ccattattgatgtcatcctcattaccttcctctgccggtaagaagcctaaacaagccact
ttggctagattcttcacttccatgaaaaataagccaacagaaggtactccttctcccaaa
aaatcatccaaacatatgctggaagatagaatggataatgttagtggggaagaggaatac
gcgaccaagaaattgaaacagacggctgttacacatactgtagcagctccaagctccatg
ggtagcaatttttcttctataccatcatccgctccctcttccggtgttgctgattcaccg
caacaatctcagaggttggtaggtgaagttgaagacgccttgagctcaaataataatgat
cactattcgtctaatatcccctattctgaagtttgtgaggtttttaacaagattgaggcc
atatcttcccgtttagagattataagaatctgttctgatttctttattaagataatgaag
caatcgtctaagaacttaatacctacaacataccttttcatcaatagattgggccctgac
tacgaagcaggcttggaattaggccttggagaaaatcttcttatgaaaaccataagcgaa
acttgcgggaaatccatgagccaaattaaacttaaatacaaggatattggggatttgggt
gaaatagcaatgggtgcgagaaatgtccaacccactatgtttaagcccaaacccttgacc
gtgggtgaggtcttcaaaaatcttagagctattgctaagactcagggcaaagattcacaa
ttaaaaaagatgaagctgatcaagagaatgcttactgcttgcaaaggtatagaggctaag
tttttgattagatccctagagtcaaaattgagaatcggtcttgctgaaaagactgtctta
atatccctatcgaaggctcttttgctccatgatgaaaatagggaggactctccagacaaa
gatgtccccatggatgtgttagaaagtgctcaacaaaagataagagacgcattttgtcaa
gtacccaactatgaaattgttataaactcatgcctggaacacggtattatgaatttagat
aaatattgtactctaagaccaggaattccattgaaacccatgttagccaagcctaccaag
gcaattaatgaagtattggatagatttcaaggcgaaacttttacgtcagaatacaaatac
gatggtgaaagggctcaggtgcatttactaaatgatggtacaatgaggatttattccaga
aatggcgagaatatgactgagagatatccagaaattaacataacggattttatccaggat
ttggatactaccaaaaatttaattctagactgtgaggctgttgcttgggacaaagatcag
gggaaaattttgcctttccaggtcttaagtacaaggaaacgtaaagacgtggagctgaat
gatgttaaagttaaagtctgtctctttgcatttgatatactttgctacaacgatgaaagg
ctgattaataagtcactaaaggaaagaagagaatacttgacgaaggttacaaaagttgtc
ccgggagaattccaatacgcgactcagataacaacaaataaccttgatgaacttcaaaaa
ttccttgatgagtccgttaatcactcatgcgaaggtttgatggtcaaaatgttggagggc
cctgaatcccattatgaaccaagtaaaaggtcaagaaactggttgaaattaaaaaaagat
tacttggagggggttggagattcattggatctctgcgtgttgggggcatattatggtaga
ggaaaaagaactggtacgtacggtgggttccttctaggatgttacaaccaagacacagga
gaatttgaaacttgttgcaagatagggacaggattttcggacgaaatgttgcagcttttg
cacgacaggttgaccccgacgatcattgatggaccaaaagccacgtttgttttcgattcg
agtgctgagccagatgtatggttcgaacctacgactttgtttgaagttttgactgcagac
ctttccctatcgcctatttataaagcaggtagtgcaacttttgataaaggcgtatcctta
agatttccaagatttttgcgtataagagaagacaagggcgtagaagatgcaacctcttct
gaccagatcgtcgaattgtatgaaaaccaatcccacatgcaaaattag

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