Entry |
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Symbol |
CDC9, MMS8
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Name |
(RefSeq) DNA ligase (ATP) CDC9
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KO |
|
Organism |
sce Saccharomyces cerevisiae (budding yeast)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:sce00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YDL164C (CDC9)
03410 Base excision repair
YDL164C (CDC9)
03420 Nucleotide excision repair
YDL164C (CDC9)
03430 Mismatch repair
YDL164C (CDC9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:sce03032]
YDL164C (CDC9)
03400 DNA repair and recombination proteins [BR:sce03400]
YDL164C (CDC9)
Enzymes [BR:sce01000]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
YDL164C (CDC9)
6.5.1.6 DNA ligase (ATP or NAD+)
YDL164C (CDC9)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
YDL164C (CDC9)
DNA replication proteins [BR:sce03032]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
YDL164C (CDC9)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
YDL164C (CDC9)
DNA repair and recombination proteins [BR:sce03400]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
YDL164C (CDC9)
NER (nucleotide excision repair)
Other NER factors
YDL164C (CDC9)
MMR (mismatch excision repair)
Other MMR factors
YDL164C (CDC9)
|
SSDB |
|
Motif |
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Other DBs |
|
Structure |
|
LinkDB |
|
Position |
IV:complement(164987..167254)
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AA seq |
755 aa
MRRLLTGCLLSSARPLKSRLPLLMSSSLPSSAGKKPKQATLARFFTSMKNKPTEGTPSPK
KSSKHMLEDRMDNVSGEEEYATKKLKQTAVTHTVAAPSSMGSNFSSIPSSAPSSGVADSP
QQSQRLVGEVEDALSSNNNDHYSSNIPYSEVCEVFNKIEAISSRLEIIRICSDFFIKIMK
QSSKNLIPTTYLFINRLGPDYEAGLELGLGENLLMKTISETCGKSMSQIKLKYKDIGDLG
EIAMGARNVQPTMFKPKPLTVGEVFKNLRAIAKTQGKDSQLKKMKLIKRMLTACKGIEAK
FLIRSLESKLRIGLAEKTVLISLSKALLLHDENREDSPDKDVPMDVLESAQQKIRDAFCQ
VPNYEIVINSCLEHGIMNLDKYCTLRPGIPLKPMLAKPTKAINEVLDRFQGETFTSEYKY
DGERAQVHLLNDGTMRIYSRNGENMTERYPEINITDFIQDLDTTKNLILDCEAVAWDKDQ
GKILPFQVLSTRKRKDVELNDVKVKVCLFAFDILCYNDERLINKSLKERREYLTKVTKVV
PGEFQYATQITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKD
YLEGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGEFETCCKIGTGFSDEMLQLL
HDRLTPTIIDGPKATFVFDSSAEPDVWFEPTTLFEVLTADLSLSPIYKAGSATFDKGVSL
RFPRFLRIREDKGVEDATSSDQIVELYENQSHMQN |
NT seq |
2268 nt +upstreamnt +downstreamnt
atgcgcagattactgaccggttgccttctttcatctgcacgtcccttgaaatcaagattg
ccattattgatgtcatcctcattaccttcctctgccggtaagaagcctaaacaagccact
ttggctagattcttcacttccatgaaaaataagccaacagaaggtactccttctcccaaa
aaatcatccaaacatatgctggaagatagaatggataatgttagtggggaagaggaatac
gcgaccaagaaattgaaacagacggctgttacacatactgtagcagctccaagctccatg
ggtagcaatttttcttctataccatcatccgctccctcttccggtgttgctgattcaccg
caacaatctcagaggttggtaggtgaagttgaagacgccttgagctcaaataataatgat
cactattcgtctaatatcccctattctgaagtttgtgaggtttttaacaagattgaggcc
atatcttcccgtttagagattataagaatctgttctgatttctttattaagataatgaag
caatcgtctaagaacttaatacctacaacataccttttcatcaatagattgggccctgac
tacgaagcaggcttggaattaggccttggagaaaatcttcttatgaaaaccataagcgaa
acttgcgggaaatccatgagccaaattaaacttaaatacaaggatattggggatttgggt
gaaatagcaatgggtgcgagaaatgtccaacccactatgtttaagcccaaacccttgacc
gtgggtgaggtcttcaaaaatcttagagctattgctaagactcagggcaaagattcacaa
ttaaaaaagatgaagctgatcaagagaatgcttactgcttgcaaaggtatagaggctaag
tttttgattagatccctagagtcaaaattgagaatcggtcttgctgaaaagactgtctta
atatccctatcgaaggctcttttgctccatgatgaaaatagggaggactctccagacaaa
gatgtccccatggatgtgttagaaagtgctcaacaaaagataagagacgcattttgtcaa
gtacccaactatgaaattgttataaactcatgcctggaacacggtattatgaatttagat
aaatattgtactctaagaccaggaattccattgaaacccatgttagccaagcctaccaag
gcaattaatgaagtattggatagatttcaaggcgaaacttttacgtcagaatacaaatac
gatggtgaaagggctcaggtgcatttactaaatgatggtacaatgaggatttattccaga
aatggcgagaatatgactgagagatatccagaaattaacataacggattttatccaggat
ttggatactaccaaaaatttaattctagactgtgaggctgttgcttgggacaaagatcag
gggaaaattttgcctttccaggtcttaagtacaaggaaacgtaaagacgtggagctgaat
gatgttaaagttaaagtctgtctctttgcatttgatatactttgctacaacgatgaaagg
ctgattaataagtcactaaaggaaagaagagaatacttgacgaaggttacaaaagttgtc
ccgggagaattccaatacgcgactcagataacaacaaataaccttgatgaacttcaaaaa
ttccttgatgagtccgttaatcactcatgcgaaggtttgatggtcaaaatgttggagggc
cctgaatcccattatgaaccaagtaaaaggtcaagaaactggttgaaattaaaaaaagat
tacttggagggggttggagattcattggatctctgcgtgttgggggcatattatggtaga
ggaaaaagaactggtacgtacggtgggttccttctaggatgttacaaccaagacacagga
gaatttgaaacttgttgcaagatagggacaggattttcggacgaaatgttgcagcttttg
cacgacaggttgaccccgacgatcattgatggaccaaaagccacgtttgttttcgattcg
agtgctgagccagatgtatggttcgaacctacgactttgtttgaagttttgactgcagac
ctttccctatcgcctatttataaagcaggtagtgcaacttttgataaaggcgtatcctta
agatttccaagatttttgcgtataagagaagacaagggcgtagaagatgcaacctcttct
gaccagatcgtcgaattgtatgaaaaccaatcccacatgcaaaattag |