Saccharomyces cerevisiae (budding yeast): YDR293C
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Entry
YDR293C CDS
T00005
Symbol
SSD1, CLA1, MCS1, RLT1, SRK1
Name
(RefSeq) mRNA-binding translational repressor SSD1
KO
K18748
protein SSD1
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YDR293C (SSD1)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
YDR293C (SSD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
OB_RNB
Rrp44_CSD1
Rrp44_S1
CCDC113_CCDC96_CC
Motif
Other DBs
NCBI-GeneID:
851887
NCBI-ProteinID:
NP_010579
SGD:
S000002701
UniProt:
P24276
Structure
PDB
PDBj
LinkDB
All DBs
Position
IV:complement(1045640..1049392)
Genome browser
AA seq
1250 aa
AA seq
DB search
MSKNSNVNNNRSQEPNNMFVQTTGGGKNAPKQIHVAHRRSQSELTNLMIEQFTLQKQLEQ
VQAQQQQLMAQQQQLAQQTGQYLSGNSGSNNHFTPQPPHPHYNSNGNSPGMSAGGSRSRT
HSRNNSGYYHNSYDNNNNSNNPGSNSHRKTSSQSSIYGHSRRHSLGLNEAKKAAAEEQAK
RISGGEAGVTVKIDSVQADSGSNSTTEQSDFKFPPPPNAHQGHRRATSNLSPPSFKFPPN
SHGDNDDEFIATSSTHRRSKTRNNEYSPGINSNWRNQSQQPQQQLSPFRHRGSNSRDYNS
FNTLEPPAIFQQGHKHRASNSSVHSFSSQGNNNGGGRKSLFAPYLPQANIPELIQEGRLV
AGILRVNKKNRSDAWVSTDGALDADIYICGSKDRNRALEGDLVAVELLVVDDVWESKKEK
EEKKRRKDASMQHDLIPLNSSDDYHNDASVTAATSNNFLSSPSSSDSLSKDDLSVRRKRS
STINNDSDSLSSPTKSGVRRRSSLKQRPTQKKNDDVEVEGQSLLLVEEEEINDKYKPLYA
GHVVAVLDRIPGQLFSGTLGLLRPSQQANSDNNKPPQSPKIAWFKPTDKKVPLIAIPTEL
APKDFVENADKYSEKLFVASIKRWPITSLHPFGILVSELGDIHDPDTEIDSILRDNNFLS
NEYLDQKNPQKEKPSFQPLPLTAESLEYRRNFTDTNEYNIFAISELGWVSEFALHVRNNG
NGTLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQKLVNLLPQSFNDELSLAPGKES
ATLSVVYTLDSSTLRIKSTWVGESTISPSNILSLEQLDEKLSTGSPTSYLSTVQEIARSF
YARRINDPEATLLPTLSLLESLDDEKVKVDLNILDRTLGFVVINEIKRKVNSTVAEKIYT
KLGDLALLRRQMQPIATKMASFRKKIQNFGYNFDTNTADELIKGVLKIKDDDVRVGIEIL
LFKTMPRARYFIAGKVDPDQYGHYALNLPIYTHFTAPMRRYADHVVHRQLKAVIHDTPYT
EDMEALKITSEYCNFKKDCAYQAQEQAIHLLLCKTINDMGNTTGQLLTMATVLQVYESSF
DVFIPEFGIEKRVHGDQLPLIKAEFDGTNRVLELHWQPGVDSATFIPADEKNPKSYRNSI
KNKFRSTAAEIANIELDKEAESEPLISDPLSKELSDLHLTVPNLRLPSASDNKQNALEKF
ISTTETRIENDNYIQEIHELQKIPILLRAEVGMALPCLTVRALNPFMKRV
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaatagcaacgttaacaacaatagatcccaagagccaaataacatgtttgtg
caaaccacaggaggtggtaaaaacgccccaaagcagattcatgttgcacacagacgttcc
caaagtgagttgacaaatttgatgattgaacaattcactttgcagaagcagttggagcaa
gttcaagcacagcagcaacagttgatggctcagcaacagcaattggcacaacagacagga
caatacctgtcaggaaattctggctctaacaatcatttcacgcctcaaccgcctcaccct
cattacaactcaaacggtaattcacctggtatgagtgcaggtggcagcagaagtagaact
cactccaggaacaactccggatattatcataattcatatgataacaataacaatagcaat
aatcctgggtctaactcacacagaaagacgagttcacaatccagcatatatggccattcc
agaagacattctttaggtctaaatgaagcgaaaaaggctgctgcggaagaacaagctaaa
agaatatctgggggtgaagcaggcgtaactgtgaagatagattctgttcaagctgatagt
ggctcaaattctactacagaacaatctgattttaaatttccaccaccaccaaatgctcat
cagggccatcgtcgcgcaacttcaaacctatcacctccctctttcaaatttcctccaaac
tctcacggggataatgacgatgaattcatagcaacctcttcaacgcaccgccgttcaaag
acaagaaacaatgaatattctccaggcattaattccaactggagaaaccaatcacagcaa
cctcaacagcagctttctccattccgccacagaggatctaattcaagggattacaattcc
ttcaataccttagaacctcctgcgatatttcagcagggacacaaacatcgtgcctctaat
tcatcagttcatagtttcagttcacaaggtaataataacggaggtggacgtaagtcccta
tttgcaccctaccttccccaagccaacattccagagctaatccaagaagggagactagta
gctggtatattaagagttaataaaaagaatagatcggatgcctgggtctctacagatggc
gctcttgatgcggatatttacatttgcggctccaaagatcgtaatagagcacttgaaggt
gatttagtcgcggtagaactattagttgtggacgatgtttgggagtccaagaaagaaaag
gaagaaaagaagaggagaaaggatgcctctatgcaacacgatctaattcctttgaacagt
agtgacgattaccacaacgatgcatctgttactgctgcaacaagcaacaattttctatct
tctccctcctcgtctgattcgctaagcaaggatgatttatccgtcagaagaaagaggtca
tctactatcaataatgatagtgattccttatcatctcctaccaaatcaggagtaaggaga
agaagttcattgaaacaacgtccaactcaaaagaaaaatgacgatgttgaagttgaaggt
cagtcattgttattagttgaagaagaagaaatcaacgataaatataagccactttacgca
ggccatgtcgttgctgttttggaccgtatccctggtcagttatttagcggtacattaggt
ttgttgagaccatcccaacaagctaatagcgacaataacaaaccaccacaaagcccaaaa
attgcttggttcaagcctactgataagaaggtgccattaattgcaattcctacagaatta
gctccaaaggactttgttgaaaacgctgataaatactccgaaaagttattcgttgcctct
attaaacgttggccaatcacatctttgcatccatttggtattttagtttccgaacttgga
gatattcacgatcctgatactgaaattgattccattttaagggataacaattttctttcg
aatgaatatttggatcaaaaaaatccgcaaaaagaaaaaccaagttttcagccgctacca
ttaacggctgaaagtctagaatataggaggaattttacggacactaatgagtacaatatc
tttgcaatttccgagcttggatgggtgtctgaatttgccttacatgtcaggaataacgga
aatggtaccctagagctgggttgtcatgttgttgatgtgaccagccatattgaagaaggc
tcctctgttgataggcgtgcgagaaagaggtcctctgcggtgttcatgccacaaaaactt
gtcaatttattaccacaatcgttcaacgacgaactgtcgttggcccctggcaaggaatca
gccacgctgtcggttgtttacactctagactcatctactttaaggattaaatctacttgg
gtaggcgaatctacaatttccccctcaaacatcttgtctttagaacaattagacgaaaaa
ttatctactggaagtcccactagctacctctctactgtacaggaaattgctagatcattt
tatgctagaagaataaatgatccagaagctacattacttcccaccctgtccttattggaa
agcttggatgacgaaaaagttaaggttgacttgaacatcctggatagaactttaggcttt
gttgtaattaatgagattaaaagaaaggtcaactccactgttgcagagaaaatttacacc
aaacttggtgatctagctcttttgagaaggcagatgcaacccattgcaaccaagatggcg
tcatttagaaagaaaattcaaaattttggttacaattttgataccaatacggcggatgaa
ttaatcaaaggggtgctaaaaattaaagatgacgatgttagagtcggaattgaaatttta
ctgtttaaaaccatgccaagagctagatactttattgctggcaaagtagacccggaccaa
tatgggcattatgccttgaacctacctatctacacacatttcacagcgccaatgagaaga
tacgctgatcatgtcgttcataggcaattaaaggccgttatccacgatactccatacacc
gaagatatggaagctttgaagattacctccgaatattgtaattttaaaaaggactgtgct
tatcaagcacaggaacaagcaattcatctattgttgtgtaaaacaatcaacgacatggga
aatactacaggacaattattaacaatggctactgtcttacaagtttacgagtcctccttt
gatgtatttattccagaatttggtattgaaaagagagttcatggagatcaactacctttg
atcaaagctgagtttgatggtaccaatcgtgtcttggaattgcattggcagcccggcgta
gatagtgcaacttttataccagcagatgaaaaaaatccaaaatcctatagaaattccatt
aagaacaaattcagatccacagccgctgagattgcgaatattgaactagataaagaagcg
gaatctgaaccattgatcagcgatccattgagtaaggaactcagcgatttgcatctaaca
gtaccaaatttaaggctaccatctgcaagcgacaacaagcaaaatgctttagaaaaattc
atttctactactgaaaccagaattgaaaatgataactatatacaagaaatacatgaattg
caaaagattcctattctattgagagctgaggtggggatggctttgccatgtttaaccgtc
cgtgcattaaatccattcatgaagagggtataa
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