Saccharomyces cerevisiae (budding yeast): YDR381W
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Entry
YDR381W CDS
T00005
Symbol
YRA1, SHE11
Name
(RefSeq) RNA-binding protein YRA1
KO
K12881
THO complex subunit 4
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03013
Nucleocytoplasmic transport
sce03015
mRNA surveillance pathway
sce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
YDR381W (YRA1)
09122 Translation
03013 Nucleocytoplasmic transport
YDR381W (YRA1)
03015 mRNA surveillance pathway
YDR381W (YRA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YDR381W (YRA1)
03041 Spliceosome [BR:
sce03041
]
YDR381W (YRA1)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
YDR381W (YRA1)
TREX complex
YDR381W (YRA1)
Spliceosome [BR:
sce03041
]
Complex C
Other components
EJC/TREX
YDR381W (YRA1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
YDR381W (YRA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
851988
NCBI-ProteinID:
NP_010669
SGD:
S000002789
UniProt:
Q12159
Structure
PDB
PDBj
LinkDB
All DBs
Position
IV:join(1236558..1236842,1237609..1238004)
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AA seq
226 aa
AA seq
DB search
MSANLDKSLDEIIGSNKAGSNRARVGGTRGNGPRRVGKQVGSQRRSLPNRRGPIRKNTRA
PPNAVARVAKLLDTTREVKVNVEGLPRDIKQDAVREFFASQVGGVQRVLLSYNERGQSTG
MANITFKNGELARRAVERFNGSPIDGGRSRLRLNLIVDPNQRPVKSLADRIKAMPQKGGN
APRPVKRGPNRKAAMAKSQNKPKREKPAKKSLEDLDKEMADYFEKK
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaacttagataaatccttagacgaaatcattggctctaacaaagcaggaagt
aatagagcccgtgtcggtggtactcgtggtaacggtccaagaagagttggtaagcaagtt
ggtagccaacgtaggagccttccaaacagaagaggccctatcagaaaaaatactagggca
cctccaaacgcagtcgctagagttgccaagctcttggacaccactagagaggtcaaggtc
aacgtcgaaggtttgccaagggacattaagcaggatgctgtaagagaattttttgcatct
caagtaggtggtgttcaaagagttttgttgagttataacgaaaggggccaatctactggt
atggctaacatcacattcaaaaacggtgaattggccagaagggctgttgaaagatttaac
ggctctccaatcgatggaggcagatcaagattgagacttaacctaatcgttgatccaaac
caacgcccagtcaaaagtttagccgacaggatcaaggctatgccacaaaaaggcggaaac
gctccaagaccagtaaagaggggtccaaatagaaaagctgctatggcaaaatcccaaaac
aaaccaaagagagaaaagcctgctaagaaaagtcttgaagatctggacaaggaaatggcg
gactatttcgaaaagaaataa
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