Saccharomyces cerevisiae (budding yeast): YDR416W
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Entry
YDR416W CDS
T00005
Symbol
SYF1, NTC90
Name
(RefSeq) mRNA splicing protein SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
YDR416W (SYF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YDR416W (SYF1)
03041 Spliceosome [BR:
sce03041
]
YDR416W (SYF1)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
YDR416W (SYF1)
Spliceosome [BR:
sce03041
]
Complex B
Other components
Prp19-related factors
YDR416W (SYF1)
Complex C
YDR416W (SYF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Suf
Motif
Other DBs
NCBI-GeneID:
852025
NCBI-ProteinID:
NP_010704
SGD:
S000002824
UniProt:
Q04048
Structure
PDB
PDBj
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All DBs
Position
IV:1298432..1301011
Genome browser
AA seq
859 aa
AA seq
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MSAYIAMKGVITNVDENIRNDEDVAFEYEIQKTPQNILTWKRYIEYWKEEGRTDKQIRWL
YERFCSQFVTDTSIWEDYIRWESTKEVVETSRIFWLFQRCLKSCVRDCDRICLSYLELAI
EQYDLAMIRHALASSLMKMEREMHRKVWDPVIKFVEEKVLPLTQLDSTQEDEEESTDEAE
LINVLLVKGFTKGGFISEEISENGSRGDIWSSHILERYLKVAPQQKRNESLATLALTRDN
ITIKSVYEKYLPQDENSGKYLPSSELPFELNFNYLASLEKLGLDNQYEEFMRQMNGIYPD
KWLFLILSLAKYYISRGRLDSCGDLLKKSLQQTLRYSDFDRIYNFYLLFEQECSQFILGK
LKENDSKFFNQKDWTEKLQAHMATFESLINLYDIYLNDVALRQDSNLVETWMKRVSLQKS
AAEKCNVYSEAILKIDPRKVGTPGSFGRLWCSYGDLYWRSNAISTARELWTQSLKVPYPY
IEDLEEIYLNWADRELDKEGVERAFSILEDALHVPTNPEILLEKYKNGHRKIPAQTVLFN
SLRIWSKYIDYLEAYCPKDANSSDKIFNKTKMAYNTVIDLRLITPAMAENFALFLQNHYE
VMESFQVYEKTIPLFPPEIQYELWIEYLEVATSHQLSSLSPEHIRFLFEKALKNLCSNGI
DCKTIFIAYSVFEERISGLISKSIEILRRGAVIGTVSVSTHLESRLQLWRMCISKAESTL
GPSVTRELYQECIQILPNSKAVEFVIKFSDFESSIGETIRAREILAYGAKLLPPSRNTEL
WDSFEIFELKHGDKETYKDMLKMKKVLESNMLIDSASVSHEEGNINFVAAATSHAPNSHT
LTQSTSSYSINPDEIELDI
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcatacatcgcaatgaaaggagtaataacaaacgtcgatgagaacataagaaat
gatgaagatgtggcttttgagtacgaaatacaaaagacaccgcagaacatacttacatgg
aaaagatatatcgagtattggaaagaggagggaagaactgacaaacagattaggtggcta
tatgaaagattttgttcacaatttgtaacagatacaagtatatgggaagattatatacgc
tgggaatcaacaaaggaagtagtcgaaacttcacgtattttctggctttttcaaaggtgc
ctgaaaagctgtgtacgagattgtgacaggatatgtttgtcttatttagaattggcaatt
gaacaatatgacttggcaatgataaggcatgccttagcttcatctttaatgaaaatggag
agagaaatgcatcggaaagtttgggatcctgtcataaaatttgtggaagaaaaagtttta
ccattaacgcaactggattcaactcaagaagatgaagaagaaagtactgatgaagctgaa
ttgataaatgtacttttagtgaagggtttcacgaagggaggttttattagcgaggaaatt
agtgaaaacggaagtagaggtgatatttggtcgtcacatattttagaaagatacttaaaa
gtggctcctcagcaaaaacgaaatgaatcgctggcaactcttgcattaactagagacaat
attaccatcaaatcagtatatgaaaagtatttgccacaagatgaaaatagtgggaagtat
ctacctagttcagaactgccttttgaattaaatttcaattatttggccagcctagaaaaa
ctaggtttagataatcaatatgaggagttcatgaggcaaatgaatggcatatatcccgac
aaatggctttttttgatcctatcacttgccaaatattatatctctcgcgggaggcttgac
agttgtggtgatttattgaagaaaagtttacagcaaacacttaggtacagtgattttgat
cgcatctataatttctatttgctatttgagcaagagtgctcccaatttattctgggaaag
ctaaaggaaaatgacagcaaattctttaatcaaaaagattggactgaaaagttacaagct
catatggcgacatttgaatctttaatcaacttatatgatatctatttgaacgatgtcgca
ctaaggcaagattccaacttggtggaaacgtggatgaaaagagtgtccttgcagaagtca
gcagcggaaaagtgtaatgtgtattcagaagctatactgaaaattgatccccgaaaagtt
ggtacgcctggctctttcggtaggctttggtgttcgtatggggatttgtattggagatca
aacgcaattagtacagctagagaattgtggacacaatctctgaaggtaccgtatccttat
atagaagatctggaagaaatttacctaaactgggctgatagagaattagataaagaaggg
gtggaaagagctttttctatccttgaagatgcattacatgtgccaacaaatccagaaatt
ctcctcgaaaaatataagaatggacacagaaaaatacctgctcaaactgttctattcaac
tcattacgtatttggtccaaatacattgattatctagaggcttactgcccaaaggatgca
aattcctccgataaaatattcaataagacaaaaatggcatacaatactgttattgatttg
agattgatcactccagcaatggcagaaaattttgcattgttcttacaaaatcattacgaa
gtcatggaaagttttcaggtgtatgagaaaacaatccctctgtttccccccgaaatccaa
tacgaattatggattgagtatctagaagtagcgacatcacatcaattgtcatcactgagt
cctgaacatattagatttttgtttgagaaagcacttaagaatctatgttcaaatggtata
gactgtaaaacaatttttatcgcttatagcgtatttgaagaaaggataagtggtctgatt
agcaagagtattgagatattacgtagaggtgctgtaataggtactgttagtgtgagcacg
cacctcgaaagtagactgcaactgtggagaatgtgtatttccaaggccgagtctactttg
ggaccatcagtaaccagagagttgtaccaagaatgcattcaaattttaccaaactctaaa
gctgttgagtttgtgattaaattttcagatttcgagagctctataggagaaactattcga
gcacgtgaaatccttgcctatggtgcaaagcttcttcctccatccagaaatactgaatta
tgggatagctttgaaatttttgagttaaaacatggggataaggaaacttacaaagacatg
ttgaagatgaagaaggtgttggaatccaacatgctcattgattcagctagcgttagccat
gaggaaggtaacattaacttcgtggcggcagcaacctcgcatgctcccaactcgcatact
cttacccaatcaacctcttcatattcgattaatccagatgaaatagaactagatatttga
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