Saccharomyces cerevisiae (budding yeast): YER171W
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Entry
YER171W CDS
T00005
Symbol
RAD3, REM1
Name
(RefSeq) TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03022
Basal transcription factors
sce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
YER171W (RAD3)
09124 Replication and repair
03420 Nucleotide excision repair
YER171W (RAD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sce03021
]
YER171W (RAD3)
03036 Chromosome and associated proteins [BR:
sce03036
]
YER171W (RAD3)
03400 DNA repair and recombination proteins [BR:
sce03400
]
YER171W (RAD3)
Enzymes [BR:
sce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
YER171W (RAD3)
Transcription machinery [BR:
sce03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
YER171W (RAD3)
Chromosome and associated proteins [BR:
sce03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
YER171W (RAD3)
DNA repair and recombination proteins [BR:
sce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
YER171W (RAD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DUF5667
Motif
Other DBs
NCBI-GeneID:
856918
NCBI-ProteinID:
NP_011098
SGD:
S000000973
UniProt:
P06839
Structure
PDB
PDBj
LinkDB
All DBs
Position
V:527082..529418
Genome browser
AA seq
778 aa
AA seq
DB search
MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ
MHYPEHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEV
SKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFEK
LLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNI
DNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADILT
DQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSFL
QHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEEGFLLII
EPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVLQ
KSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVF
FPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILLS
VARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFMRENYRIRENDFLSFDAMR
HAAQCLGRVLRGKDDYGVMVLADRRFSRKRSQLPKWIAQGLSDADLNLSTDMAISNTKQF
LRTMAQPTDPKDQEGVSVWSYEDLIKHQNSRKDQGGFIENENKEGEQDEDEDEDIEMQ
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgaagttttatatagatgatttaccagtgctttttccataccccaagatatatccagag
cagtataattatatgtgcgatattaaaaagactctggatgtaggtggaaatagtatcttg
gagatgccttcaggaacaggtaaaacggtctcattactatccctcacaattgcctaccag
atgcactacccagaacatagaaagatcatatattgttctcgtactatgtctgaaattgaa
aaagctttagtagagttagagaaccttatggattacagaactaaagaactaggctatcaa
gaggattttcgaggtcttggcttgacatcaagaaaaaatttgtgtttgcatcccgaagtg
agtaaggaacgaaaaggtacagtagtcgatgaaaagtgccgtagaatgacaaatgggcag
gcgaagagaaaattagaagaggatccagaggcaaatgtagaattgtgtgaataccatgag
aatttgtacaatattgaagtagaggattatcttccaaaaggcgtattttcttttgaaaaa
cttttgaaatactgcgaagaaaaaacactttgtccatattttattgttcgtcgtatgatt
tctctttgtaacattattatttattcttaccattatctattagatcctaaaattgctgaa
agagtttccaacgaggtttctaaagatagcattgtcatttttgatgaagcgcacaatatt
gataatgtgtgtatcgaatcgctgtcattagacttgacaacggatgcattgagaagagcc
acacgaggtgctaatgcgttagatgaacgtatttctgaggtcagaaaggttgactcacag
aaattacaggatgaatacgaaaaactagttcaaggtctccattctgcagatattcttacc
gaccaggaagagccatttgtggaaacacctgtattgccccaagatcttctaacagaagca
atcccgggaaatatacgaagagccgagcattttgtttcatttttgaaaagattgatagaa
tatctgaagaccagaatgaaagttcttcacgttatttcagaaacgccaaaatcatttcta
cagcatttaaaacagttaactttcatagaaaggaaacctcttcggttttgctcagaaagg
ctatcattacttgtaagaactttagaagttacagaggtagaagattttactgcattgaaa
gacatagcaacttttgctactcttatatcaacatatgaggaagggtttttactaattatt
gaaccgtatgaaatcgaaaatgctgcagttccgaatccgattatgagatttacttgctta
gatgcatcgattgccatcaaaccagtctttgagagattttcttccgttattatcacttca
gggaccatatcaccattagacatgtatccaagaatgttaaactttaaaactgttttacaa
aaatcatatgccatgaccttagccaaaaaatcatttctaccaatgattattaccaagggt
tctgatcaagttgcaatttcttcaagatttgaaatcagaaacgatcctagtattgttcgt
aattacggttctatgctagtagagtttgccaagatcacacctgatggaatggttgttttt
ttcccctcatatctatatatggaaagtattgtttcaatgtggcaaacaatgggtattctt
gacgaagtttggaaacataaattaattttagttgagactcctgatgctcaagaaacttct
ttagccttagaaacctatagaaaggcttgctcaaatgggcgtggggcaattttgctttct
gttgctagaggaaaggtatctgaaggtatcgattttgatcatcaatatggcagaactgtg
ctgatgataggtatcccgtttcaatacacagaatcgcgtattttgaaagctcgcctagaa
ttcatgagggagaactatcgcatcagagaaaacgacttcttatctttcgatgcgatgaga
catgcagctcaatgtctggggagagtactgagagggaaggacgactatggtgtaatggta
ctagcagaccgtaggttttcaagaaaaagaagccagttaccaaaatggattgctcaaggt
ttgtctgacgccgatttgaacctttcgactgacatggccatatccaataccaaacaattc
ttgagaacaatggcacaacccacagaccctaaagaccaagagggtgtatctgtttggagt
tatgaagatttaataaagcaccagaatagcagaaaagatcaaggtggatttattgaaaac
gaaaacaaagaaggagaacaggatgaagatgaagatgaagatatagaaatgcagtga
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