Saccharomyces cerevisiae (budding yeast): YFL002C
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Entry
YFL002C CDS
T00005
Symbol
SPB4
Name
(RefSeq) putative ATP-dependent RNA helicase SPB4
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sce03009
]
YFL002C (SPB4)
Enzymes [BR:
sce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YFL002C (SPB4)
Ribosome biogenesis [BR:
sce03009
]
Eukaryotic type
Pre-60S particles
Helicases
YFL002C (SPB4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
850549
NCBI-ProteinID:
NP_116654
SGD:
S000001894
UniProt:
P25808
Structure
PDB
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All DBs
Position
VI:complement(145114..146934)
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AA seq
606 aa
AA seq
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MSKSLEWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAA
FVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQ
LLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDM
SFIKDTEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNY
CVVNPAEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLH
GKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGR
TGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDRD
RFDKGVKAYVAFIKYYSNHSATSIFRLQSLDYVGIAKLYGLFRLPRMPEITKYLATEKQE
GIFPGNWLVDPPVNMDEYKYKDKKREKERQETLKNISLINDKKKLKSELKKKNLAWSDKT
LTKERKLERKEKMSLKRKAIEEELKAEELDENAEEERIKEDWKEIVLQNKRKKVSSKAIQ
GNFDDL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagtcattggaatgggataatctcgggttttctttacttccctggataaggaca
ggactcgatgttatgggttttgagaccatgactccagtccaagcatcgacaattcccatg
cttgctggcaacaaggatgtagtagttgattctgtaacaggctcaggtaagaccgctgcg
tttgttatacctgtactagaaaaagttgtaaaggaagaagcgaatacatcaaaattcaag
aaagcacacttccactcgttaattattgctccaacaagagaattgtcacgccaaattgag
tctgtcgttctatcatttctggaacattatccttccgacttgttccctattaaatgtcag
ctcctggttggtactaatgaagccacagttagagatgatgtaagtaattttctgcggaat
agaccgcagattctgattggaacacctggtagagttttggactttttacaaatgccagca
gtaaagacgtcagcatgcagtatggtagttatggatgaagcagacagattgttggatatg
agttttattaaggataccgaaaaaattctgaggctattgcctaaacaaagaaggacgggt
ctattttctgcaactatgcgtagcgccggatcagatatctttaagacagggcttagaaat
cctgtcaggattaccgttaactctaagaaccaggcgccctcctctttgaaattaaattac
tgtgtcgtaaatcctgccgaaaaactacaacttttggttagcattttgaataactacaaa
ttcaagaaatgtattgtatattttccaacatgtgtgtcagtctcctacttctactcattt
atccagtatttgggaaagaggaatattctcgtgaatgaagtagaaatattttccttgcat
ggaaaacttcaaacatcggcaaggacaaaaactctaacagcttttactgattcgctaagt
aattctgttttattcacaacagatgtggctgctagaggtattgacatacccgacgttgat
ctcgtcatccagcttgatccccctaccaatactgatatgttcatgcatagatgtggtaga
actggtagagcaaatagagtgggtaaagcaattacgtttcttaatgaaggcagagaagag
gattttattcctttcatgcaagttaaaaatgtggaacttgaagaacttgatttggaagta
aagggcataacaacaaacttttacgaggactttagaaattggatactagaagatagggat
agatttgataaaggtgttaaagcatatgttgcctttattaaatactactcaaatcattcc
gcaacttcaatttttaggcttcaatctttagattatgttggtattgcgaaattgtatggt
cttttccgcctgcctagaatgcctgagataacaaagtacttagccaccgaaaaacaagaa
gggattttcccagggaattggttggtcgatcccccagttaatatggatgaatataaatac
aaggacaaaaaacgtgaaaaggagagacaagaaacattaaaaaatataagcctgattaat
gataaaaagaagctgaaaagtgagttgaagaagaagaatttagcgtggtcagataaaaca
ttgacgaaagaacggaaactcgagagaaaggaaaagatgagtttaaaaaggaaggctata
gaggaagaattgaaagcagaagagctcgatgaaaatgctgaagaagagcgtattaaagag
gattggaaagaaatcgttttacagaataaacggaagaaagtttccagcaaagctatccaa
ggcaattttgacgacttataa
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