Saccharomyces cerevisiae (budding yeast): YGL094C
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Entry
YGL094C CDS
T00005
Symbol
PAN2
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YGL094C (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YGL094C (PAN2)
Enzymes [BR:
sce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
YGL094C (PAN2)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
YGL094C (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
YGL094C (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
RNase_T
PAN2_N
WD40_CDC20-Fz
PEP5_VPS11_N
WD40_Prp19
Beta-prop_WDR36-Utp21_1st
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
ANAPC4_WD40
VPS11_N
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR5
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
852786
NCBI-ProteinID:
NP_011421
SGD:
S000003062
UniProt:
P53010
Structure
PDB
PDBj
LinkDB
All DBs
Position
VII:complement(331118..334465)
Genome browser
AA seq
1115 aa
AA seq
DB search
MNNWQHFFNNPVDLSEHLKKPYFRFDNRDKEITAISFDEKANLIWSGDSYGCISSYDPTF
QLYTRYRGHIGGNSVKDILSHRDGILSISEDSLHFANRRGVTKLNLTSIDIAAFSELNTM
CYSPHSLKNNIYCGGDNTNWGIASIDLNRGCLDSLLNYSSKVKLMCSNNKVLSIGRQTGT
VDLLDPTSNRTIKSFNAHSASISAMDLRDNTLVTVGKSKRFYNLYADPFVNVYDLRTMRQ
LPPVSFSKGTTMGSGGADFVQLHPLLPTVMIVASSSGSFDFIDLSNPTLRTQYVHPCQSI
KKLCLSPNGDVLGILEADNHLDTWRRSSNNMGMFTNTPEMLAYPDYFNDITSDGPISVDD
ETYPLSSVGMPYYLDKLLSAWPPVVFKSEGTIPQLTGKSPLPSSGKLKSNLAVISSQNEK
LSTQEFPLLRYDRTKYGMRNAIPDYVCLRDIRKQITSGLETSDIQTYTSINKYEVPPAYS
RLPLTSGRFGTDNFDFTPFNNTEYSGLDPDVDNHYTNAIIQLYRFIPEMFNFVVGCLKDE
NFETTLLTDLGYLFDMMERSHGKICSSSNFQASLKSLTDKRQLENGEPQEHLEEYLESLC
IRESIEDFNSSESIKRNMPQKFNRFLLSQLIKEEAQTVNHNITLNQCFGLETEIRTECSC
DHYDTTVKLLPSLSISGINKTVIKQLNKKSNGQNILPYIEYAMKNVTQKNSICPTCGKTE
TITQECTVKNLPSVLSLELSLLDTEFSNIRSSKNWLTSEFYGSIIKNKAVLRSTASELKG
TSHIFKYELNGYVAKITDNNNETRLVTYVKKYNPKENCFKWLMFNDYLVVEITEEEALKM
TYPWKTPEIIIYCDAEELRKPFFSVDTYSINYDILFRDYFANGIRDTARREYKLLTHDEA
PKSGTLVAIDAEFVSLQSELCEIDHQGIRSIIRPKRTALARISIIRGEEGELYGVPFVDD
YVVNTNHIEDYLTRYSGILPGDLDPEKSTKRLVRRNVVYRKVWLLMQLGCVFVGHGLNND
FKHININVPRNQIRDTAIYFLQGKRYLSLRYLAYVLLGMNIQEGNHDSIEDAHTALILYK
KYLHLKEKAIFEKVLNSVYEEGRAHNFKVPETSKG
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgaataattggcaacatttcttcaacaatccagttgatctttcggaacatttgaagaag
ccatactttcgcttcgataatagggataaggaaattacagcgattagcttcgatgagaag
gcaaacttaatttggagtggagacagctatggttgcatttcgtcatatgatccaactttt
caactttatacaagatataggggccacataggtggaaattccgtgaaggatattctcagt
catcgggatggtattttatctattagtgaagattccttacactttgctaatagaagaggt
gttactaaattgaacctcactagcattgatattgctgcatttagcgaattgaacactatg
tgctattctcctcattcactgaaaaacaatatctactgtggtggtgacaacacaaattgg
ggaattgcgtccattgacttgaacagaggttgcttagattccctcttgaattactcatct
aaagtgaagttaatgtgctctaataataaagttttgtctatcggaagacaaacagggact
gtggatttgctagatccaacatcgaatcgtactatcaaatcatttaatgcacactctgca
tccatatccgctatggatttacgggataacaccttggttacagtagggaagtccaaaaga
ttttataacttatacgctgacccatttgtgaatgtttacgacttgagaacaatgcgtcaa
ctccctcctgtttccttttctaaaggaacaactatgggatctggaggcgcagattttgtt
caattacatcctttgcttcctactgttatgatcgtcgcctcaagttctggttcgtttgat
ttcatcgacctttccaatccaactttaagaacacaatatgttcatccttgccagtcgatt
aaaaagttatgtttgtcccccaatggtgacgtattgggtatactagaagctgataatcac
ctagatacatggagaagatcatcaaacaacatgggaatgtttaccaatacccctgaaatg
ctagcatatcctgattattttaatgacattacctctgacggcccaatatctgtcgacgat
gaaacatatccattgagttctgtggggatgccgtactatcttgataaacttttgtctgca
tggccccctgtagtgtttaaaagtgaaggtaccataccgcaattaacaggtaagtcaccc
ttaccatcgagcggcaaattaaaaagtaaccttgctgtgatctcgagccaaaatgagaag
ttgagcacacaagaatttcctttgttaagatatgatcgcaccaaatacggtatgagaaat
gctataccagattacgtttgtctaagagatataaggaaacagataacaagcggtttagaa
accagcgatatacagacatatacctcaatcaacaagtacgaagtaccccctgcatacagt
agacttccactgacatcaggtagatttggtactgataattttgattttacgccctttaat
aacactgagtattcaggattggatccagatgttgataatcactacacaaatgctatcata
caattgtatcgctttattccagaaatgtttaatttcgttgttgggtgtttgaaagacgag
aattttgaaacaacgttgctaactgatctaggctacctctttgacatgatggaaagatca
catggaaaaatatgtagttcttccaattttcaggcgtcattgaaatccttaactgataaa
agacaattagaaaacggtgaaccacaagaacatttagaagagtatttagaatcgctgtgc
ataagggaaagtatcgaggattttaattcttctgaaagtattaaacgcaatatgcctcaa
aaatttaacagattcctgctctcgcaacttattaaagaggaagcgcagacagtcaaccat
aatatcaccctaaatcaatgctttggtttggaaacggaaatacgaacagagtgtagctgt
gatcactacgacactaccgtcaaacttctaccctccttatcaatatcaggaatcaacaaa
accgtaatcaaacaattgaacaagaaaagcaatggacagaatattttgccttatattgaa
tatgccatgaaaaatgtaacccaaaagaacagtatttgcccaacctgcggcaaaaccgaa
actatcacccaggagtgtactgtcaagaatttaccttcagtgttgtcattagaattatca
ctattagataccgaattttccaatataaggtcgtcgaaaaactggttaactagtgaattt
tatggaagcatcattaaaaacaaggcagttctaagatcgacggcgtccgaattgaagggc
acaagccacatatttaaatacgaattgaatggttacgtggctaaaatcactgataacaat
aacgagacgcgtctagtaacatatgtcaaaaaatataatccaaaagagaattgcttcaag
tggctcatgtttaatgattatttggttgttgagataacagaggaagaggcgcttaaaatg
acatacccttggaaaacaccagaaattatcatatattgtgatgcggaagaattacgaaaa
cctttcttttctgttgatacgtattccatcaactatgacatacttttccgtgattatttc
gcaaacggaataagagatactgcaagacgtgaatataagttattaacacatgatgaggca
cctaaatctggaaccttggttgccattgatgccgaatttgtctcattacaaagtgaacta
tgtgaaatcgatcatcaaggaatcagaagtattattcgacctaaaagaactgctttggcc
agaatatccattattagaggcgaagaaggagaactgtatggagtaccatttgtcgatgat
tatgtggtaaacacgaaccacatagaagactatttgacaagatatagtgggattcttcct
ggtgacttggaccctgaaaagagtaccaaaaggcttgtgagaagaaacgttgtatatcga
aaagtctggcttttaatgcagctcggatgcgtatttgttggtcatggtttgaataatgac
ttcaaacacattaatattaatgtcccaagaaaccaaattcgcgacactgccatatatttt
ctacaaggaaagagatatctttcattgcgttatctggcatatgtgttgttaggaatgaat
atccaagagggaaatcacgattcaattgaagatgcccatactgccttgattctttacaaa
aaatatctccacctgaaagaaaaagctatctttgagaaagtactgaacagcgtgtacgaa
gaaggaagagcccataatttcaaagttccagaaacttcaaagggataa
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