Saccharomyces cerevisiae (budding yeast): YGR072W
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Entry
YGR072W CDS
T00005
Symbol
UPF3, SUA6, SUP112
Name
(RefSeq) Upf3p
KO
K14328
regulator of nonsense transcripts 3
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03013
Nucleocytoplasmic transport
sce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
YGR072W (UPF3)
03015 mRNA surveillance pathway
YGR072W (UPF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YGR072W (UPF3)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
YGR072W (UPF3)
mRNA cycle factors
P-body specific factors
YGR072W (UPF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
852963
NCBI-ProteinID:
NP_011586
SGD:
S000003304
UniProt:
P48412
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Position
VII:634304..635467
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AA seq
387 aa
AA seq
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MSNVAGELKNSEGKKKGRGNRYHNKNRGKSKNETVDPKKNENKVNNATNATHNNSKGRRN
NKKRNREYYNYKRKARLGKSTENEGFKLVIRLLPPNLTADEFFAILRDNNNDDGDKQDIQ
GKLKYSDWCFFEGHYSSKVFKNSTYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIP
DMKLSPYVKKFTQTSKKDAALVGTIEEDEIFKTFMNSMKQLNENDEYSFQDFSVLKSLEK
EFSKSIELENKIAERTERVLTELVGTGDKVKNKNKKKKNKNAKKKFKEEEASAKIPKKKR
NRGKKKRENREKSTISKTKNSNVVIIEEAGKEVLKQRKKKMLLQEKLKISNSSQPQSSSA
QTQPSFQPKENLFVPRVKILHRDDTKK
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgtggctggggaattgaagaatagtgaggggaaaaagaaaggcaggggaaat
aggtatcataacaagaacagaggaaaaagtaagaatgagacggtagatcctaaaaagaat
gagaataaggttaataatgctactaatgctacccacaacaatagcaaaggcagaaggaat
aacaagaaaaggaacagagagtattataactataaaagaaaggctagattgggtaaatca
accgagaatgaaggatttaagcttgttattagattgctacctccaaatttgactgcagat
gaattttttgccatcttacgagataataataacgatgatggtgataagcaagatatccag
ggtaaactcaagtacagtgactggtgtttttttgaaggtcattattctagtaaagtattc
aaaaactcgacatattctcggtgcaatttcttgttcgacaacttatcagacttggaaaaa
tgcgcaaatttcattaaaacttgtaaattcattgataataaggataatattacaattcca
gatatgaaactgtcgccctacgtaaagaaattcactcaaacatcaaaaaaggatgccgcg
ctagtaggaacaattgaagaagacgaaatttttaaaacatttatgaattcaatgaaacag
ctgaatgaaaatgacgagtactcattccaagattttagcgtattgaaatctttagaaaaa
gaattctcaaaaagcatagagttagaaaataaaatagcagaaagaacagaaagggtgtta
acagagctggttggaactggtgataaggtcaagaataagaacaaaaagaagaaaaataaa
aacgccaaaaagaaattcaaagaagaggaagcatccgctaagataccaaagaaaaaacgg
aacagaggcaagaagaagcgtgaaaatcgtgaaaaaagcaccatttctaagaccaagaac
agtaatgtggttattattgaggaagcgggtaaagaggttttgaaacaaaggaagaagaaa
atgcttttgcaagagaagttaaaaatatcaaactcctctcagcctcagtcatcatccgct
caaacccagccgtcgttccaacctaaagaaaaccttttcgtaccacgggtaaaaattttg
catcgtgatgataccaagaagtag
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