Saccharomyces cerevisiae (budding yeast): YHR069C
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Entry
YHR069C CDS
T00005
Symbol
RRP4
Name
(RefSeq) exosome non-catalytic core subunit RRP4
KO
K03679
exosome complex component RRP4
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YHR069C (RRP4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YHR069C (RRP4)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
YHR069C (RRP4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
YHR069C (RRP4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP4
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
MotA_activ
Motif
Other DBs
NCBI-GeneID:
856466
NCBI-ProteinID:
NP_011936
SGD:
S000001111
UniProt:
P38792
Structure
PDB
PDBj
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All DBs
Position
VIII:complement(233579..234658)
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AA seq
359 aa
AA seq
DB search
MSEVITITKRNGAFQNSSNLSYNNTGISDDENDEEDIYMHDVNSASKSESDSQIVTPGEL
VTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVVGRIAEVG
NKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDG
SASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWLRKTSQMD
LARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNIRQAICRY
ANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEKMRGNGN
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagttatcacaattaccaagcggaacggtgccttccaaaattcatctaacctg
tcctataacaacacagggatatcagatgatgaaaatgatgaagaagatatctacatgcac
gatgttaactcagcttctaaaagtgagtctgattctcaaattgtgacgccaggtgagctg
gtcactgatgaccctatctggatgagaggtcacggtacgtattttcttgataatatgacg
tattcctctgttgctggtactgtatcccgtgtcaataggctgctatcggtaattccattg
aaaggtcgttatgccccagaaactggtgatcacgtcgtagggagaattgctgaagtgggt
aacaagagatggaaagtagacattggcggtaagcaacatgcagtacttatgttgggctct
gtgaatttaccgggtggtattctaagaagaaaatctgaaagtgatgaactacaaatgaga
agcttccttaaggaaggtgacctcctgaatgcagaagttcaatcattatttcaagatggt
agtgcctctttacatacaaggtctctaaagtacgggaagttaagaaacgggatgttttgc
caagtcccgagttcattaatagtgagagccaagaaccatactcataatttgcccggcaac
ataaccgtagttctcggagtcaatggttacatatggttaaggaaaacatctcagatggac
ttagcgagggatacgccgtctgcaaataacagttcctcaattaaatcaactggacccact
ggtgcggtatcattaaatccctccataacaagactggaagaagagtcttcatggcaaata
tattcggatgaaaacgatccttccatatcgaacaacatacgacaagcaatttgccggtat
gcgaacgtgatcaaagcgttagcgttctgtgaaataggcattactcaacaacgtatagta
agtgcttacgaagctagtatggtttattcaaacgtaggtgaactgattgagaaaaatgta
atggaatccataggcagtgacattcttaccgccgaaaaaatgagaggtaacggcaactaa
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