Saccharomyces cerevisiae (budding yeast): YHR077C
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Entry
YHR077C CDS
T00005
Symbol
NMD2, IFS1, SUA1, SUP111, UPF2
Name
(RefSeq) Nmd2p
KO
K14327
regulator of nonsense transcripts 2
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03013
Nucleocytoplasmic transport
sce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
YHR077C (NMD2)
03015 mRNA surveillance pathway
YHR077C (NMD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YHR077C (NMD2)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
YHR077C (NMD2)
mRNA cycle factors
P-body specific factors
YHR077C (NMD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Nop14
Motif
Other DBs
NCBI-GeneID:
856476
NCBI-ProteinID:
NP_011944
SGD:
S000001119
UniProt:
P38798
Structure
PDB
PDBj
LinkDB
All DBs
Position
VIII:complement(join(252374..255637,255751..255756))
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AA seq
1089 aa
AA seq
DB search
MDDGRKKELHDLNTRAWNGEEVFPLKSKKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDL
SEASLEKYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGRFTSPLLGAFLQAF
ENPSVDIESERDELQRITRVKGNLRVFTELYLVGVFRTLDDIESKDAIPNFLQKKTGRKD
PLLFSILREILNYKFKLGFTTTIATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFK
NFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLG
EFFKLEIPELEGASNDDLKETASPMITNQILPPNQRLWENEDTRKFYEILPDISKTVEES
QSSKTEKDSNVNSKNINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMET
QDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQL
IPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKND
RQLNMNMKSALENIITLLYPPSVKSLNVTVKTITPEQQFYRILIRSELSSLDFKHIVKLV
RKAHWDDVAIQKVLFSLFSKPHKISYQNIPLLTKVLGGLYSYRRDFVIRCIDQVLENIER
GLEINDYGQNMHRISNVRYLTEIFNFEMIKSDVLLDTIYHIIRFGHINNQPNPFYLNYSD
PPDNYFRIQLVTTILLNINRTPAAFTKKCKLLLRFFEYYTFIKEQPLPKETEFRVSSTFK
KYENIFGNTKFERSENLVESASRLESLLKSLNAIKSKDDRVKGSSASIHNGKESAVPIES
ITEDDEDEDDENDDGVDLLGEDEDAEISTPNTESAPGKHQAKQDESEDEDDEDDDEDDDD
DDDDDDDDGEEGDEDDDEDDDDEDDDDEEEEDSDSDLEYGGDLDADRDIEMKRMYEEYER
KLKDEEERKAEEELERQFQKMMQESIDARKSEKVVASKIPVISKPVSVQKPLLLKKSEEP
SSSKETYEELSKPKKIAFTFLTKSGKKTQSRILQLPTDVKFVSDVLEEEEKLKTERNKIK
KIVLKRSFD
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggacgatggacggaaaaaagaattgcatgatttgaacacccgagcttggaatggcgaa
gaagtctttcccctgaaaagtaaaaaactggattccagtataaagagaaacactggcttt
ataaaaaaactaaagaagggttttgtgaaaggttcagaatcttcattattgaaagattta
agtgaggcgtccttggaaaagtacctatcagagataatagtgacggtaacagaatgtctg
ctaaatgttttgaataaaaatgatgacgtaattgccgctgttgagatcataagtggactt
catcaaaggttcaatggccgatttactagtccgcttttaggagcttttttacaagctttt
gagaacccctctgttgacattgaatccgaaagagatgagcttcaaaggataaccagagtt
aaaggtaatcttcgggtatttaccgagctttatttagttggagtttttagaacattggat
gatattgagtcgaaagatgctattccaaacttcctacagaagaaaactgggcgaaaggat
ccgttgttattcagtattctcagagagattcttaattataagttcaaattgggctttact
accactattgcgaccgcatttattaagaaatttgcacctttgtttcgcgacgatgataat
tcttgggatgatttaatatatgactcgaagttaaaaggtgcgttacagtctctgtttaag
aattttatagacgccacttttgcgagggccacagaactgcataagaaggtcaataaactg
caaagagaacatcagaaatgccaaataagaacgggaaaattgagagatgagtacgtagag
gagtacgacaagttacttccaatattcattaggttcaagacatctgcaattactttggga
gaattttttaagttagaaattccggagcttgaaggtgcctctaatgatgatctgaaagaa
acagcttctccaatgatcacgaatcagatattgccacccaaccaacgattatgggaaaat
gaagatacaaggaaattttatgaaatcttaccagatatctcaaaaacagtagaagaatca
caatcttctaaaacagaaaaagattcaaacgttaactcaaaaaatatcaatctattcttt
acggatttggaaatggcagattgtaaagatataatcgatgacctttcaaatagatattgg
tcatcatatttggacaacaaagccacaagaaatcgaatattgaaatttttcatggaaaca
caagattggagcaaactgccagtgtattccagatttattgcaacaaatagcaaatatatg
ccggaaattgtttctgagtttattaactacctagacaatggcttcaggagtcaattacat
tctaataagattaacgttaaaaacatcatcttcttcagtgaaatgattaaatttcaatta
ataccatcgtttatgatttttcataagattagaacattaatcatgtatatgcaagttcca
aataacgtagaaattttgacggttttgttggagcactcagggaaatttctgctaaataag
ccagaatataaggaattaatggaaaaaatggtccaactaatcaaggataaaaaaaatgat
aggcaattgaacatgaacatgaaaagcgccttagaaaacataattactttactttatccc
ccttctgtaaaatcattaaatgttacggtaaaaacaataacgcctgaacaacagttttat
cgcatattaattagaagtgaactaagtagcctagacttcaaacacattgtcaagttggtt
cggaaagctcactgggacgatgtagctattcagaaagtgctgttttctctgttttcaaaa
ccacataagattagctatcaaaatattcccttattaacaaaagttctaggcggtctatac
agttaccgccgcgatttcgtcatcagatgtatagaccaagtactggaaaacattgagcga
ggcttagaaattaacgattatggacaaaacatgcatagaatatcaaatgtcagatactta
actgaaatattcaactttgaaatgataaaatccgatgttttgttagatactatctaccac
attattcggtttggtcatatcaacaatcaacccaatccattttatttaaactactcagat
ccaccggataattatttcaggattcaactagtcactacaattctgttaaatatcaacagg
acccctgcagcttttactaagaaatgcaaacttttgctgaggtttttcgagtattatact
tttattaaagaacaacctttacccaaggaaacagaattcagagtttcaagcacatttaaa
aaatatgagaatattttcggaaacactaaatttgaaaggtcagaaaatttggtagaaagt
gcctcaaggttggaaagtttactgaaatcattaaacgcaataaaaagtaaagacgacaga
gtgaagggatcttctgcaagcattcacaacggtaaggagagtgctgttcctatcgagtca
atcaccgaagatgatgaggatgaagatgatgaaaacgacgatggtgtcgatttactagga
gaagatgaagacgcggagataagtacaccgaacacagagtcagcgccaggaaaacatcag
gcaaagcaagacgaaagtgaagatgaagacgatgaggacgatgacgaggatgatgacgat
gacgatgacgatgatgatgatgatggagaagaaggcgatgaggatgatgatgaagatgat
gatgatgaggatgatgatgatgaagaagaagaagacagcgactctgatttggagtatggt
ggtgatcttgacgcagacagagatattgaaatgaaacgaatgtatgaagagtacgagaga
aaactaaaggatgaggaagaaaggaaagcggaagaagaattggaaaggcaatttcagaaa
atgatgcaagaatccatagacgcaaggaaaagcgaaaaggttgttgccagtaaaattcca
gtaatttcgaagccagtcagcgttcaaaaacctttattattaaaaaagagtgaagaacct
tcttcaagcaaggagacctacgaagagttatccaagccaaagaagattgcatttacgttc
ttgactaaaagcggtaagaagacacaatcaagaattttacaattaccaacggatgtgaaa
tttgtctctgatgtccttgaagaagaagagaaactaaaaaccgagcgaaacaagattaaa
aagattgttttaaaacgttctttcgactga
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