Saccharomyces cerevisiae (budding yeast): YKL012W
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Entry
YKL012W CDS
T00005
Symbol
PRP40
Name
(RefSeq) Prp40p
KO
K12821
pre-mRNA-processing factor 40
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
YKL012W (PRP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sce03041
]
YKL012W (PRP40)
Spliceosome [BR:
sce03041
]
Complex A
U1 snRNP components
U1 related factors
YKL012W (PRP40)
Complex B
YKL012W (PRP40)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
CEP164_N
Glyco_hyd_101C
WW_2
YlaC
WHD_BrxR
Motif
Other DBs
NCBI-GeneID:
853857
NCBI-ProteinID:
NP_012913
SGD:
S000001495
UniProt:
P33203
Structure
PDB
PDBj
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All DBs
Position
XI:418310..420061
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AA seq
583 aa
AA seq
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MSIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNP
TTRETSWTIPAFEKKVEPIAEQKHDTVSHAQVNGNRIALTAGEKQEPGRTINEEESQYAN
NSKLLNVRRRTKEEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKE
MFEKYLSNRSADQLLKEHNETSKFKEAFQKMLQNNSHIKYYTRWPTAKRLIADEPIYKHS
VVNEKTKRQTFQDYIDTLIDTQKESKKKLKTQALKELREYLNGIITTSSSETFITWQQLL
NHYVFDKSKRYMANRHFKVLTHEDVLNEYLKIVNTIENDLQNKLNELRLRNYTRDRIARD
NFKSLLREVPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDEQRMYIFA
QRSIAQQTLIDQNFEWNDADSDEITKQNIEKVLENDRKFDKVDKEDISLIVDGLIKQRNE
KIQQKLQNERRILEQKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDN
IRRQIFEDFKPESSAPTAESATANLTLTASKKRHLTPAVELDY
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttggaaggaagctaaagatgcaagtggaaggatatattattacaatactttg
acaaagaaatctacgtgggagaagcccaaggaactaatttctcaggaggagctacttctt
cgagaaaatggctggaaggcggccaagacggcagacggcaaagtatactattataatcca
acaacaagagaaaccagctggactattccggccttcgagaagaaagtagaacccatcgca
gaacaaaaacatgatacagtatcccatgcacaggttaatggaaatagaatagcccttacg
gctggagaaaaacaagagccgggacgaactataaacgaggaggaaagccaatatgctaat
aactctaaactgcttaatgtcaggagaaggactaaagaagaagcagagaaggaatttatt
accatgctgaaggaaaatcaagtagactctacttggtcattcagtagaattatttcagaa
ctggggaccagagatccaaggtattggatggtcgatgatgaccccttatggaagaaagaa
atgtttgagaaatatctttccaatagatcagccgatcaacttcttaaggaacacaatgaa
acaagcaaattcaaagaagcctttcagaaaatgttgcaaaacaattctcatataaaatat
tacacccgttggcctaccgcaaagagactaattgccgacgaaccaatatacaaacactcc
gtggtcaatgaaaagacaaagagacagacctttcaagattatatagataccctcatcgac
actcagaaagaatcaaaaaaaaaattgaaaacacaggccctaaaagaactaagagagtat
ttaaacggtattataacaacatcatcctctgaaactttcataacctggcagcagctttta
aatcactatgtttttgataagagtaagagatatatggcgaaccggcacttcaaagtctta
acccacgaagatgttttaaacgagtatctgaaaatagtaaatacgattgaaaacgatctt
caaaacaaactaaatgagctccgactgcgcaattataccagagaccgtattgctagagat
aactttaaaagcttattaagagaagtgccaatcaaaatcaaagcaaatactagatggtca
gatatttatcctcatataaagtctgatccgcgctttttacatatgcttggaaggaatggc
tcgtcctgccttgatttatttttagattttgttgatgaacaaaggatgtacatctttgca
caaagatcaatagcccaacagacgttgatagatcaaaattttgaatggaatgatgccgat
agcgacgagatcaccaagcaaaacatagaaaaagttctggaaaatgaccggaaatttgac
aaggtggataaagaagacatcagtttgattgttgatggtttgataaagcaaagaaacgaa
aagatacaacagaaactccaaaatgagcgtaggatattggagcaaaagaagcactatttt
tggttacttttgcaaaggacatatacaaaaaccggtaagcccaagcctagtacgtgggat
ttagcttccaaagagcttggcgaatctcttgaatacaaggcactaggcgatgaagataac
ataagaagacaaattttcgaggattttaagcctgaaagctctgcaccgactgccgaaagc
gctactgcaaacttaacgttgaccgcgtcaaaaaagaggcatttaactccggctgtggaa
ttggactattga
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