Entry |
|
Symbol |
VPS13, SOI1, VPT2, YME3
|
Name |
(RefSeq) membrane morphogenesis protein VPS13
|
KO |
K19525 | vacuolar protein sorting-associated protein 13A/C |
|
Organism |
sce Saccharomyces cerevisiae (budding yeast)
|
Brite |
KEGG Orthology (KO) [BR:sce00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:sce04131]
YLL040C (VPS13)
Membrane trafficking [BR:sce04131]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
YLL040C (VPS13)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
XII:complement(54211..63645)
|
AA seq |
3144 aa
MLESLAANLLNRLLGSYVENFDPNQLNVGIWSGDVKLKNLKLRKDCLDSLNLPIDVKSGI
LGDLVLTVPWSSLKNKPVKIIIEDCYLLCSPRSEDHENDEEMIKRAFRLKMRKVSEWELT
NQARILSTQSENKTSSSSSEKNNAGFMQSLTTKIIDNLQVTIKNIHLRYEDMDGIFTTGP
SSVGLTLNELSAVSTDSNWAPSFIDITQNITHKLLTLNSLCLYWNTDSPPLISDDDQDRS
LENFVRGFKDMIASKNSTAPKHQYILKPVSGLGKLSINKLGSTEEQPHIDLQMFYDEFGL
ELDDTEYNDILHVLSSIQLRQITKKFKKARPSFAVSENPTEWFKYIAACVINEIHEKNKM
WTWESMKEKCEQRRLYTKLWVEKLKLKNLEAPLRDPIQEAQLSELHKDLTYDEIILFRSV
AKRQYAQYKLGMTEDSPTPTASSNIEPQTSNKSATKNNGSWLSSWWNGKPTEEVDEDLIM
TEEQRQELYDAIEFDENEDKGPVLQVPRERVELRVTSLLKKGSFTIRKKKQNLNLGSIIF
ENCKVDFAQRPDSFLSSFQLNKFSLEDGSPNALYKHIISVRNSSKDQSSIDNHATGEEEE
EDEPLLRASFELNPLDGLADSNLNIKLLGMTVFYHVHFITEVHKFFKASNQHMETIGNIV
NAAEATVEGWTTQTRMGIESLLEDHKTVNVSLDLQAPLIILPLDPHDWDTPCAIIDAGHM
SILSDLVPKEKIKEIKELSPEEYDKIDGNEINRLMFDRFQILSQDTQIFVGPDIQSTIGK
INTASSTNDFRILDKMKLELTVDLSILPKAYKLPTIRVFGHLPRLSLSINDIQYKTIMNL
IANSIPSMIDDEENNGDYVNYSSGSEKEMKKQIQLQLKNTLKALENMQPLQIEQKFLELH
FDIDQAKIAFFQCIKNDSRNSEKLVDILCQRLNFNFDKRAKEMNLDLRVHSLDVEDYIEL
TDNKEFKNLISSGVEKVTRSQKDLFTLKYKRVQRIVPHNDTLIELFDQDIVMHMSELQLV
LTPRSVLTLMNYAMLTFTDPNAPEMPADVLRHNKEDRDDAPQKINMKIKMEAVNVIFNDD
SIKLATLVLSAGEFTMVLLPERYNINLKLGGLELTDETNESFSRDSVFRKIIQMKGQELV
ELSYESFDPATNTKDYDSFLKYSTGSMHVNFIESAVNRMVNFFAKFQKSKVSFDRARLAA
YNQAPSIDAVNNMKMDIVIKAPIIQFPKLVGTQENNYDTMRFYLGEFFIENKFSVIDESH
KINHIKLGVREGQLSSNLNFDGSSQQLYLVENIGLLFNIDRDPLPQDDTPELKVTSNFES
FALDLTENQLTYLLEISNKVSSAFNITDENSGESGGKGEIKSPSPDPASLSSESERTATP
QSLQGSNKSNIKNPEQKYLDFSFKAPKIALTLYNKTKGVTSLNDCGLTRIMFQDIGCSLG
LKNDGTVDGQAHVAAFRIEDVRNIKDNKHTELIPKSKNKEYQFVANISRKNLEVGRLLNI
SMTMDSPKMILAMDYLVSLKEFFDAIMSKSHENNLYYPENTNQKPENKAIVESVQEGGDV
TKIQYSVNIIETALILLADPCDMNSEAISFKIGQFLVTDQNIMTVAANNVGIFLFKMNSS
EEKLRLLDDFSSSLTIDKRNSTPQTLMTNIQLSVQPLLMRISLRDIRLAMLIFKRVTTLL
NKMTEKEDNGEEEESTDKIQFSHEFERKLAVLDPSILGERSRASQSSDSESIEVPTAILK
NETFNADLGGLRFILIGDVHEMPILDMNVNEITASAKDWSTDFEALASLETYVNIFNYSR
SSWEPLLEMIPITFHLSKGHSEMDPAFSFDILTQRIAEITLSARSIAMLSHIPASLTEEL
PLASRVSQKPYQLVNDTELDFDVWIQDKTTEDNKNEVVLLKANTSLPWEFEDWRSIREKL
DIDKSKNILGVCVSGQNYKTIMNIDATTEGENLHVLSPPRNNVHNRIVCEARCDENNVKI
ITFRSTLVIENTTSTEIELLVDSKDPNKPSLKYAIKPHQSKSVPVEYAYDSDIRIRPASE
DIYDWSQQTLSWKSLLSNQMSIFCSSKEDSNQRFHFEIGAKYDEREPLAKIFPHMKIVVS
ASMTIENLLPADINFSIFDKREEKRTDFLKTGESMEVHHISLDSFLLMSVQPLQDEASAS
KPSIVNTPHKSPLNPEDSLSLTLSGGQNLLLKLDYKNIDGTRSKVIRIYSPYIIMNSTDR
ELYIQSSLLNIAQSKILLENEKRYTIPKMFSFDKEDDKSNRARIRFKESEWSSKLSFDAI
GQSFDASVRIKNKEQESNLGINISEGKGKYLLSKVIEIAPRYIISNTLDIPIEVCETGSM
DVQQIESNITKPLYRMRNIVDKQLVLKFLGGDSNWSQPFFIKNVGVTYLKVLKNSRHKLL
KIEILLDKATIFIRIKDGGDRWPFSIRNFSDHDFIFYQRDPRKVSDPYKDDQSNESSSRS
FKPIFYRIPSKSIMPYAWDFPTAKEKYLVLESGTRTREVRLAEIGELPPLRLDKRSKDKP
APIVGLHVVADDDMQALVIVNYKANVGLYKLKTASATTTSSVSVNSSVTDGFVQKDEDEK
VNTQIVVSFKGVGISLINGRLQELLYINMRGIELRYNESKAYQTFSWKMKWMQIDNQLFS
GNYSNILYPTEIPYTEKEIENHPVISGSISKVNDSLQAVPYFKHVTLLIQEFSIQLDEDM
LYAMMDFIKFPGSPWIMDSRDYKYDEEIQLPDVSELKTAGDIYFEIFHIQPTVLHLSFIR
SDEISPGLAEETEESFSSSLYYVHMFAMTLGNINEAPVKVNSLFMDNVRVPLPILMDHIE
RHYTTQFVYQIHKILGSADCFGNPVGLFNTISSGVWDLFYEPYQGYMMNDRPQEIGIHLA
KGGLSFAKKTVFGLSDSMSKFTGSMAKGLSVTQDLEFQRVRRLQQRINKNNRNALANSAQ
SFASTLGSGLSGIALDPYKAMQKEGAAGFLKGLGKGIVGLPTKTAIGFLDLTSNLSQGVK
STTTVLDMQKGCRVRLPRYVDHDQIIKPYDLREAQGQYWLKTVNGGVFMNDEYLSHVILP
GKELAVIVSMQHIAEVQMATQELMWSTGYPSIQGITLERSGLQIKLKSQSEYFIPISDPE
ERRSLYRNIAIAVREYNKYCEAIL |
NT seq |
9435 nt +upstreamnt +downstreamnt
atgttagagtctttagctgctaatttgctaaaccgattgctaggctcatatgtggaaaat
ttcgaccctaatcaattaaatgtcggcatatggagtggtgatgtgaagttaaaaaactta
aaactaagaaaagactgtttggactcattaaatttacccatagatgtgaaatcagggata
ctgggtgatttggtcttaacggtcccatggtcaagtttaaagaataagcccgtgaaaatc
attatcgaggactgttatttattatgctcaccacgttcagaagatcacgaaaatgatgag
gagatgataaagagagcttttcggttgaagatgaggaaggtaagtgaatgggaactgaca
aatcaggctcgcatactgagtacccaatcagagaacaaaacctcttcttcttcttcagaa
aaaaataacgccgggtttatgcagtctttgactacaaagatcatagacaatttacaagtt
accataaaaaatatccatttaaggtacgaggacatggacggaatcttcactacaggccca
tcttccgttggattaactttgaacgagctatcagctgtatctacagattccaactgggct
ccaagtttcattgatattacacagaatatcacgcataaactattgactttaaattcactc
tgtttgtattggaatacagactctccgcccttgatttctgatgatgatcaagatagaagc
ctggaaaattttgtaaggggtttcaaagatatgattgcatcgaaaaattccactgccccc
aagcatcaatacattttgaaaccggttagcgggctagggaagcttagtatcaacaagctg
ggttccacggaggaacaacctcacattgacttgcaaatgttttatgatgaatttggttta
gaattagatgatacagaatataatgatatcttgcatgtcctctccagtatacagttaaga
caaattaccaaaaagtttaagaaagcaagaccatccttcgcagttagtgaaaacccgaca
gaatggtttaaatacattgctgcttgtgttattaatgaaattcatgaaaaaaacaaaatg
tggacttgggaaagcatgaaggagaaatgtgaacaacggaggttgtacacaaaattatgg
gttgaaaagttaaagttaaaaaatttagaagctccgctacgtgaccccattcaggaggct
caattatctgaattgcataaagatttaacgtatgatgaaattattctcttcagatctgtc
gctaagagacagtacgcgcaatataagttgggcatgacggaagactcacccacaccaaca
gctagctcaaatattgaaccacaaacttccaacaagtccgcaactaaaaataatggaagc
tggctctcttcttggtggaacggtaaacctacagaagaagtagacgaagatttaataatg
actgaagaacagcgtcaggagctttatgatgctattgaatttgacgagaatgaagataaa
ggtcctgtactgcaagttcctagagaaagggttgaacttcgtgtaacgagtttgttaaaa
aagggttcattcactatacgaaagaagaagcaaaatctaaatttgggttccataattttt
gaaaattgtaaagttgattttgctcaaagacctgattcatttttatcgagtttccaattg
aacaaattcagtctcgaagatggctcacccaacgcgttatataaacatatcattagtgtc
agaaactcatctaaagatcaatcttcaattgacaaccacgctaccggggaggaagaagaa
gaggatgaacctttattacgtgcttcatttgaattgaatccactagatggattagcagat
tcgaacttaaacattaagttattgggaatgactgtgttttaccacgttcatttcattaca
gaggtccacaagttttttaaggcgtcaaaccaacacatggaaacaatcggcaatatcgta
aacgccgccgaggcaactgtagaaggttggacaacacaaacaagaatgggtattgagtct
ttgttggaagaccacaagaccgtaaatgtatctttagatttacaagcaccattaatcata
ttaccgttagacccacatgattgggataccccttgtgcgatcattgatgccggtcatatg
tctatactcagtgatttagtgccaaaggagaagataaaggaaataaaagagttatcgccg
gaagaatatgacaagattgacggtaacgaaatcaataggttaatgtttgataggttccaa
attttatctcaggatactcagatatttgttggtcctgatattcagtctactataggtaag
atcaataccgcctcttccacgaatgattttagaatcttggataaaatgaaattagagtta
actgtagatctatcaatccttcctaaagcatataaattacccacgataagagtttttggt
catttgcctcgcttaagtctttccataaatgacattcaatacaagactattatgaatttg
attgctaattctataccttctatgattgatgatgaagaaaacaacggcgattacgttaat
tactcttctggttccgaaaaagaaatgaagaagcaaattcaattgcagttgaagaatact
ttgaaagcgttagaaaatatgcagccgcttcaaattgaacagaaattcttagagctccat
tttgatatcgatcaggcgaaaatagcattctttcaatgtatcaaaaatgattccagaaac
agcgaaaaattggttgatatattgtgtcaaaggctaaatttcaattttgataagagagcc
aaagaaatgaatttagatctaagagtacattcattagatgttgaagattacatcgagctg
actgataacaaggaattcaaaaacttgatatcatccggcgttgaaaaagtgacaagatct
caaaaagatttgtttacgctaaaatacaagagagtgcagagaattgtgcctcataacgat
actttgattgaattattcgatcaagatattgttatgcatatgagtgaattgcaattggta
ttaacacctagatctgtattaactttaatgaattatgcaatgcttacttttacggatcct
aacgctccagaaatgccggctgatgtgttgagacataataaagaagatagggacgatgcg
ccacaaaaaatcaatatgaaaattaaaatggaggccgtcaatgttatttttaatgatgat
tctataaagctggcaacgttagttctatcggctggtgaattcacaatggttttactaccg
gaaagatacaacattaacttaaaattaggcgggttggagttgactgatgaaacaaatgaa
tcgttttccagggattcggtatttagaaaaataattcaaatgaaaggtcaagaactagtc
gaattgagctatgaatcattcgatccggctacaaataccaaagattatgattcgttttta
aaatattctacgggctctatgcatgttaattttatcgaaagtgctgttaacagaatggtt
aacttttttgctaaatttcaaaaatctaaagtatcctttgatagagctcgtcttgcagcg
tacaaccaagccccttccattgacgccgtaaataacatgaaaatggacatagtaatcaag
gcacctattatccagtttcctaaattagtaggcacacaagagaacaattacgatacaatg
cggttttatttgggtgagttctttattgaaaacaaattttcggtaatagacgaatctcat
aaaataaaccatatcaaacttggtgtccgcgagggccaattatcctcgaacttaaacttc
gatggttccagtcaacaattgtatctagttgaaaatataggtttacttttcaatatagac
agagatccccttccgcaagatgacactccagaacttaaagtaacgagtaattttgaatca
tttgcgttggatttgactgagaaccagctgacttacttattagaaatttccaataaagta
tcctctgcattcaatatcacagacgaaaactctggtgaatcaggaggaaaaggcgagatc
aaaagtccctctcctgaccctgcttctttaagtagcgaaagcgaacgcacagctactcct
cagtctctacagggatcgaataaaagcaatataaaaaatccagaacaaaaatacttggat
ttttcttttaaagctccaaagattgcccttactttatataacaagacaaagggcgtcact
tctttgaatgactgtggtctgacaagaattatgtttcaagacattgggtgcagccttggt
ttaaagaatgatgggaccgtcgatggtcaagcacatgttgctgctttccggatagaagat
gttcgtaatataaaagataataagcatacagaactaataccaaagagtaagaataaagaa
tatcaatttgtggctaatatttccagaaagaacttagaggtcggacggctattgaacatt
tcgatgacaatggacagtccgaaaatgattttggcaatggactatttggtttctctcaaa
gaattttttgatgcaattatgtccaaaagccacgaaaacaatttatactatcctgaaaac
acaaaccaaaagcctgaaaacaaggctattgttgaaagcgttcaagaaggtggtgatgtg
actaaaatccaatactctgttaatatcatcgaaacggctctgatcttacttgctgatcct
tgcgacatgaatagtgaggctatttctttcaagataggacaatttttagtaaccgatcag
aatattatgacagttgcagccaataatgttggtatcttcctattcaaaatgaattcgtct
gaagaaaaattgagattattggacgacttttcatcctccttgacaattgataaaagaaac
tcaactcctcagaccctaatgacgaatatacagctttccgttcagcccctgttgatgcgt
atttcacttagagatattcgtctggcgatgttaatattcaaacgagttaccacattgcta
aataagatgacggaaaaagaggataatggagaggaggaggagagcacagacaaaatacaa
ttttctcatgaatttgaaaggaaattagcggtgttggatccaagcattttaggtgagcgc
agcagggctagccagagctcagattccgaatcaattgaagtgcctactgcaattttgaaa
aacgaaacattcaatgctgacttaggcggactgagatttattttaattggtgacgtccat
gaaatgccaatattggacatgaatgtaaatgaaatcactgcttcagcaaaggattggtct
accgactttgaagctcttgcttctctagaaacctatgttaacatattcaactattcgaga
tctagctgggagccacttctggagatgattccaataacattccacctatcaaaagggcat
tctgaaatggatcctgctttctcttttgatattttaactcaaagaatcgcggaaattaca
ctttctgctaggtcaatcgctatgctttctcacatcccggcgtctctaaccgaagagctg
cccttagcttccagggtatctcagaagccatatcaactggtaaacgatacagaattagat
tttgacgtctggatacaggataaaacgactgaagacaacaaaaacgaagttgtgctctta
aaagcaaacacttctcttccttgggaatttgaagattggagaagtattagagagaaattg
gatattgataagtcgaagaacattttgggtgtttgtgtttctgggcaaaattataaaacc
attatgaatattgatgccacaacagaaggtgaaaacttgcatgttttgagcccaccaaga
aataatgtgcataatagaattgtttgtgaggccagatgtgatgagaataacgtgaagatt
attacgtttaggtcaactttagttatcgaaaacacaacttcaactgagattgagcttttg
gttgactccaaagatccaaataagccatctttaaaatatgctattaaaccacatcaaagt
aaatctgttcctgtagaatatgcctacgattctgatattaggataagacccgcatcagag
gatatatacgattggtctcaacagacgttatcttggaaaagcttgttgagcaaccaaatg
tctatattctgttcttcaaaagaagattccaatcaaagatttcatttcgaaattggtgca
aagtatgatgaaagagaaccattggcaaagatctttcctcatatgaaaatcgtggtttcg
gcatctatgactattgaaaatttacttccagcagatattaacttctctatttttgacaaa
agagaggagaagagaacagatttcttgaagactggagaaagtatggaagttcatcatatt
tctttggatagtttcctgctaatgtctgttcaaccattacaagatgaggcttctgcttca
aagccctccatcgttaatacaccacataaaagtcctttaaacccagaagattcgttgtct
ttgaccctatctggaggtcagaatttgttgttgaaactagattataaaaacatcgatggt
acaaggtccaaagttattcggatatactccccttatattattatgaactctaccgataga
gaactctacattcaaagtagtctcttaaatattgcacaatccaagattttgcttgaaaac
gaaaaaagatatactattccaaaaatgttttcatttgataaagaagatgataaaagtaac
agagctcgtattaggttcaaggaatcagagtggagttccaaattatcatttgacgctatt
ggccaatcatttgatgcatctgttcgcataaaaaataaggaacaagaatcaaatttaggc
atcaacattagcgaaggtaaagggaagtacttgctaagtaaagttattgagattgcacct
aggtatattataagcaatactttagatatccctattgaagtttgcgagacagggtctatg
gatgtccagcaaatagaatcgaacatcactaagcctttatacaggatgagaaacatcgtc
gacaagcaattagtgctgaaattcttaggcggagactccaattggtcacaaccattcttt
atcaaaaatgtcggtgtaacatatttgaaagttttgaaaaattcacgccataagctttta
aagattgaaattcttttggacaaagcaacaatattcataagaatcaaggacggtggtgac
agatggccattttccataagaaatttcagcgaccatgactttatattttaccaaagagat
cctcgtaaagttagtgatccatacaaggatgaccagtctaacgagtcctcaagccgtagt
ttcaaacctatcttttacaggattccctcgaaaagtattatgccatacgcatgggatttt
cctacagctaaggagaaatatctggtgttagaatcaggtacacgtacaagggaagttcgg
ttggctgagattggcgaattgccaccgttacgcctggataaaaggtcaaaggataaacca
gcccccattgttggattacatgttgttgctgacgacgatatgcaggccttagttattgtt
aactataaggccaatgttgggttatacaaattgaaaactgcctctgcaactaccacgtct
tcagtttcagtaaatagttcagtgactgatggctttgtgcaaaaggatgaggatgagaag
gttaatacacagatagttgtttcgttcaaaggagttggtatctcattaatcaatggtcgt
ttacaggaacttctatatattaacatgagagggatcgaattaagatacaatgaatctaaa
gcataccagactttcagttggaaaatgaaatggatgcaaatagataatcaattattttca
ggaaactactcaaatattctatatccaacagaaatcccctacacagaaaaggaaattgaa
aatcatccagtgatatcaggttctatttctaaagtcaacgattccttacaggctgtccca
tactttaaacatgttacgttattaatccaggaattttccatacaattagatgaagacatg
ctgtatgctatgatggacttcataaaattcccaggatccccatggatcatggattcaaga
gattataagtacgatgaagaaatccagttacctgatgtttctgaattaaaaacggcgggt
gatatatatttcgagatcttccatattcagcccaccgtcttacatctgtcctttatacgc
tccgatgaaattagtccaggattggctgaagagaccgaggagtcattttcgtcatcattg
tactatgtccatatgtttgctatgacattaggtaatataaatgaggcgccggttaaagtt
aattctttgttcatggataatgtaagagtcccattgcccattctgatggaccatattgag
agacactatacgacccagttcgtgtatcagatccacaaaattttaggatcagcagattgt
tttggtaatcctgtaggtcttttcaacacaattagttccggtgtctgggacttattctat
gaaccatatcaaggttacatgatgaatgataggcctcaagaaattggtatacatctggct
aaaggtggactaagttttgcaaagaaaacagtctttggcctctctgatagtatgtccaag
tttacggggtcgatggccaagggcctgtcagttacacaagatctggaattccaaagggtc
aggagattacaacaaagaataaataaaaacaacaggaatgccttggcaaactcagcgcaa
tcctttgccagcacactgggaagcgggttgagcggaattgcactggacccatacaaggcc
atgcaaaaggaaggcgccgctggtttcctcaaaggccttggtaaaggtatcgttgggctg
ccaactaagacagccattggattcttagatcttacaagtaacttaagtcaaggcgtgaaa
agtaccaccactgtgcttgacatgcaaaagggttgcagagtgcgtctaccaaggtacgtg
gaccatgatcaaatcatcaagccttatgatctacgtgaggcccaaggacaatactggctc
aagaccgtgaatggaggagtatttatgaatgatgaatacctgtcgcacgttatattgcca
ggcaaagaactagcagtaattgtgtccatgcagcacattgctgaggtgcaaatggccacc
caagagcttatgtggagcacaggatatccttccatccagggaattacattggaaagatcc
ggtcttcaaattaaactcaagtctcaatccgaatacttcattcccatcagcgatcctgaa
gaacgtcggtccttgtacaggaacatcgccattgctgttagagaatacaataagtactgt
gaagctatcctatga |