Saccharomyces cerevisiae (budding yeast): YLR398C
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Entry
YLR398C CDS
T00005
Symbol
SKI2
Name
(RefSeq) SKI complex RNA helicase subunit SKI2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YLR398C (SKI2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YLR398C (SKI2)
Enzymes [BR:
sce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
YLR398C (SKI2)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
YLR398C (SKI2)
mRNA degradation factors
3'-5' decay
Ski complex
YLR398C (SKI2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
Ski2_beta-barrel
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
MTR4_beta-barrel
FTCD_C
Motif
Other DBs
NCBI-GeneID:
851114
NCBI-ProteinID:
NP_013502
SGD:
S000004390
UniProt:
P35207
Structure
PDB
PDBj
LinkDB
All DBs
Position
XII:complement(915156..919019)
Genome browser
AA seq
1287 aa
AA seq
DB search
MSEGFSSSSIQELYQSLKEITNNADVELFEDRITKLDFESTDEPKHANDIIKDRFLRPSN
ALPWSLLDMVQDVPHTSSPEDCSGKLDYKELLKVPDPINRTSYQFKRTGLEGKISGYKEE
VDLKEVANANASNSLSITRSINHNQNSVRGSTAQLPFTPGGIPMKSVKTDSEQNGSSTMA
NATKLLHKDGQGLFDIPEGMNRGIKPMDSPAENEDQNGQFKELKQLNEIDNELDIRIEAN
EAKLKEEEKSAKSISEEIMEEATEETTADNADDAEIDELLPIGIDFGRTKPVSKSVPVKK
EWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVV
AEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMT
TEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPN
TYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEIL
NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNK
RKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQI
HMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLF
ATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY
NSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQP
EHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSILHILK
EGRLVAFRDPNDCLKLGFVFKVSLKDAVCVIMTFTKPYKLPNGEPNHLIYFPKADGYRRR
NFPKFQKTDFYMEEVPVTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDGKTLK
EAINIEKQGLKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHL
MSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGS
FEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDE
AEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIG
NSTLHMKMSRAQELIKRDIVFAASLYL
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagggattcagtagcagttccatacaggaattatatcaatcgttaaaagaaatc
actaacaacgcagacgtagagcttttcgaagatcgcattactaaattagattttgagagc
accgatgaaccaaagcatgcaaatgatatcataaaggatagatttttgagaccttctaat
gctcttccttggagcttgttggacatggtccaagacgttccacatacgtcttctccagaa
gattgctctggtaaactagattacaaggaattgctgaaagtcccggacccaattaataga
acatcataccagtttaaaagaactgggttagaaggtaaaatttcaggctacaaagaagag
gttgatttgaaggaagttgcaaatgccaatgcatcaaattcactgtcgattacgagaagt
atcaaccataaccaaaactcagtaaggggttctacagcgcaattgcctttcacaccaggc
ggaattcccatgaaatctgtcaagacagattcagaacaaaatggatcttctacaatggcc
aacgctactaaattgttacacaaggatggtcaaggtttattcgatattccagagggtatg
aatagaggcattaagccgatggattctccagctgaaaatgaggatcaaaacggacagttc
aaagaattgaaacagctaaatgagatagataatgaattagacataaggattgaggcgaac
gaggcaaagttaaaagaggaggaaaaatctgccaagtcaatttctgaagaaattatggag
gaagccactgaagaaacgactgccgataatgctgatgatgccgaaatcgatgaactatta
ccaattggaatagactttggcagaactaaaccagtttcgaaaagtgttcctgttaaaaag
gaatgggcccatgttgttgatttgaaccataagatcgaaaatttcgatgagttgattcca
aaccccgctagatcgtggccttttgaattggatacatttcaaaaggaagccgtctatcat
ctcgaacaaggtgattccgtatttgttgccgcccacacatctgctggtaaaactgttgtt
gcagaatacgcaattgccatggcacatagaaacatgactaaaactatatatacatcaccc
attaaagccttatccaatcaaaaattccgagactttaaagaaacttttgacgatgttaat
attgggttgattactggtgatgtgcaaattaatccggatgctaactgtttgattatgacg
accgaaattttaagatcaatgctttatagaggtgccgatttgatcagagatgtagagttt
gtcattttcgatgaagttcactacgttaatgatcaagaccgtggtgttgtctgggaagaa
gttattattatgcttccacagcatgtcaagtttatcttattatctgccaccgttcctaac
acttatgagtttgctaattggattggaagaactaagcaaaaaaatatttatgtcatttcc
acaccaaaaagacccgttccattggaaataaatatatgggctaaaaaggaactgataccg
gttattaatcaaaattcagaatttttagaagctaatttcaggaaacataaagagattcta
aatggggagagtgcaaaaggggctccttcaaaaactgacaacgggagaggtggatccaca
gcaagagggggccgtggtggatccaatactcgagatggaagaggaggccgtggtaattca
acacgtggaggtgccaaccgtggaggttcaagaggtgctggcgcaattggctccaacaag
cgtaagtttttcactcaagatggtccttcgaaaaaaacatggcccgaaattgtcaattac
ctaaggaaaagagagcttctaccaatggttgttttcgtatttagtaaaaagaggtgcgag
gaatatgctgactggttggagggaattaacttctgcaacaataaggaaaaatcacaaatc
cacatgtttattgagaagtcgattactcgtttgaaaaaagaggatagagatttgcctcaa
attcttaaaaccagatcattacttgaacgtggtatagctgttcatcatggggggctattg
cccattgtcaaggagttgatcgaaatattattttccaagggttttatcaaagttttattt
gcaacagaaacttttgccatgggtttgaaccttcccacaagaacagttatctttagcagc
atccgtaaacatgatggtaatggattaagagaactgactccaggtgagtttacccaaatg
gctggtagagctggtagaaggggcttggattccactggtacagtcattgtgatggcatat
aatagtcctttatctattgctacgttcaaagaagtaacgatgggtgttccgacgaggttg
cagtctcagtttagattaacatacaatatgatattaaatcttttaagaattgaggcgttg
agagttgaagaaatgatcaagtattcttttagtgagaatgccaaagaaactttacaacct
gaacatgaaaaacaaatcaaagtattacaagaggaattacaaaccatagagtacaaaagt
tgtgaaatctgtgataatgatatcgaaaagtttttggaattgatgctggcatataaggag
gcaacagtcaacctaatgcaagaaatggttaaatcgccttcgatattgcatatcttgaaa
gagggcagactcgttgcttttagggaccccaatgattgcttgaaattaggatttgtattt
aaagtttctctgaaggatgctgtttgtgtcattatgacgttcacaaaaccatacaaactc
ccaaatggtgagccaaatcatttaatatactttccaaaagcggatggatacagaagaagg
aacttccctaaattccagaagactgatttttatatggaagaagttcctgtgacggctatt
gaagtgatcactaaacgcaagtttgccgcacccttgggaaaagtgattaaaaaggatgtt
gccgctttgaacgagtttaacgctgaaacaaataacattttggacggcaaaacgctaaaa
gaagcaattaacattgaaaagcaaggtttaaaaattcaccaaatattgttagaccgtaca
aatataagggatgagatattcaaactaaaaagcattaaatgtcccaacctaagccaacac
attgttcccaagtttaaggcgcatgtaattaaaaagaaaattgaagaattgtaccatttg
atgtctgaccaaaatctgagcttactacccgattatgaaaagagattggctgttctgaaa
gacactgaatttatcgaccaaaaccacaacgtgctgttaaaaggtagagtggcatgtgaa
attaattctggttatgagttagttttaactgaattaattttagacaactttttaggaagc
tttgaacctgaagagattgtagccttattatcagtatttgtttatgaggggaaaaccagg
gaagaggagcctcctattgtcacaccaaggctagcaaagggtaaacaaagaattgaggaa
atttacaagaaaatgctttgtgttttcaatacgcatcagattccattaactcaggatgaa
gctgagtttttggacagaaaaaggtttgccatgatgaatgtggtgtatgagtgggcccgt
ggtttatcattcaaagaaatcatggaaatgagccccgaggctgaaggtactgtagtcaga
gttatcacttggctagacgaaatttgccgcgaagttaagactgcctctattattattggt
aattccacattacatatgaagatgagcagggctcaagagttgattaagagagatattgtt
ttcgccgcaagtttgtatttatag
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integrated database retrieval system
