Saccharomyces cerevisiae (budding yeast): YMR080C
Help
Entry
YMR080C CDS
T00005
Symbol
NAM7, IFS2, MOF4, SUP113, SUT2, UPF1
Name
(RefSeq) ATP-dependent RNA helicase NAM7
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03013
Nucleocytoplasmic transport
sce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
YMR080C (NAM7)
03015 mRNA surveillance pathway
YMR080C (NAM7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YMR080C (NAM7)
Enzymes [BR:
sce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
YMR080C (NAM7)
5.6.2.5 RNA 5'-3' helicase
YMR080C (NAM7)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
YMR080C (NAM7)
mRNA cycle factors
Common to processing body (P body) and stress granule
YMR080C (NAM7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
PIF1
nSTAND3
Helicase_RecD
PhoH
AAA_22
AAA_16
T2SSE
Motif
Other DBs
NCBI-GeneID:
855104
NCBI-ProteinID:
NP_013797
SGD:
S000004685
UniProt:
P30771
A0A8H4BYL9
Structure
PDB
LinkDB
All DBs
Position
XIII:complement(426712..429627)
Genome browser
AA seq
971 aa
AA seq
DB search
MVGSGSHTPYDISNSPSDVNVQPATQLNSTLVEDDDVDNQLFEEAQVTETGFRSPSASDN
SCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVL
ECYNCGRKNVFLLGFVSAKSEAVVVLLCRIPCAQTKNANWDTDQWQPLIEDRQLLSWVAE
QPTEEEKLKARLITPSQISKLEAKWRSNKDATINDIDAPEEQEAIPPLLLRYQDAYEYQR
SYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTLSTFESNELKVAIGDEMI
LWYSGMQHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDR
MQDALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHV
LQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVV
RLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTE
AEILNKADVVCCTCVGAGDKRLDTKFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQ
QLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNG
VTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDG
VKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRA
NEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLD
NLQLCTVQLVRPQPRKTERPMNAQFNVESEMGDFPKFQDFDAQSMVSFSGQIGDFGNAFV
DNTELSSYINNEYWNFENFKSAFSQKQNRNEIDDRNLYQEEASHLNSNFARELQREEQKH
ELSKDFSNLGI
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggtcggttccggttctcacactccttatgatatatcaaactctccatctgatgtaaat
gtccaacccgcaacacaactaaattccaccttggtggaggatgacgatgtagataatcag
ctatttgaagaggctcaagtcactgagactggattccgttcgccttcagcttcagacaat
tcatgtgcgtattgtggtatagattctgcaaagtgtgtcatcaaatgtaattcatgtaag
aaatggttttgtaacactaaaaacggtacaagcagctcccacattgttaatcacttagtt
ttatcccaccataacgtagtttctttacatccagattctgacttaggggataccgttttg
gaatgttataactgtggacgtaagaacgtgtttttattgggatttgtttccgctaaaagt
gaggccgtggttgttttactttgtagaataccttgtgcccagacgaaaaatgcgaactgg
gatactgatcaatggcaaccattaattgaagacagacaacttttatcatgggtcgcagag
caaccaactgaagaagaaaaattgaaagctcgtttaatcactcctagccaaatttccaag
ttggaggcaaaatggagatccaataaagacgctacaattaatgatattgacgccccagag
gaacaggaagcaatcccacctttactattgagatatcaagacgcctacgaataccaaaga
tcttacgggcctttaatcaaattggaggccgactatgataaacaactcaaggaatctcaa
gctttagaacatatttctgtttcatggtccttagctttaaataataggcatttagcatct
ttcactttatctactttcgaatctaacgagttgaaagttgccatcggtgatgaaatgata
ctatggtactctggcatgcaacatcctgattgggaaggtcgtggttacattgttcggtta
ccaaatagcttccaggacacattcacattagagttaaaaccaagtaaaacgccacctcca
acacatttgaccactggttttactgctgagttcatctggaaaggtacctcttatgacagg
atgcaagacgcattgaaaaaatttgccattgataaaaaatctatttcaggttatttgtac
tataaaattttaggccatcaagtggttgacatttcatttgatgtcccattacctaaggag
ttttcaattccgaattttgcacaattaaactcatcccagtcgaacgctgttagtcatgta
ttacaacgtccgttatctttaattcaaggcccaccaggcactggtaaaacagttacttca
gcaacgattgtgtatcacctttccaaaatacacaaggatagaatattggtgtgtgcccca
tcaaacgttgctgtagatcatttggctgccaaattacgtgacttgggtttaaaagttgtt
agacttaccgcgaaaagtagagaagatgtggagagttccgtctccaacttagcattgcat
aatttggttggccgtggtgctaaaggggaattaaaaaacctattaaagttaaaggatgaa
gttggcgaattatctgcttctgatacaaaacggtttgttaaattagtaaggaaaacagaa
gcagaaattctcaataaggcagatgtcgtatgttgcacatgtgttggtgctggtgataag
cgcttagacactaaatttaggactgtgttaattgatgaaagtactcaagcttctgagccg
gaatgtttaatcccaatcgttaaaggtgcgaaacaagttatacttgttggtgatcaccag
caactgggcccagtcatattggaacgaaaggcggcagacgctggtttgaaacaatctctc
tttgaaagattaatctctctaggccacgtaccgattcgtttggaagttcaataccgtatg
aatccttatttgagtgagtttccaagtaacatgttttatgaaggcagcctacaaaatggt
gtaacgattgaacagcgtaccgttcccaacagcaaattcccatggccaattcgcggtata
ccaatgatgttttgggccaattacggtagagaggagatttctgctaacggtacttccttc
ttaaacagaattgaagccatgaattgtgaacgaatcatcactaaacttttcagagacggt
gtcaagcccgagcaaattggtgttatcacaccatatgagggacaaagagcttatatttta
caatatatgcaaatgaatggttcattggataaggatttgtatatcaaagtggaagttgcc
tcagttgatgcattccaaggtcgtgaaaaggattacataatcttatcgtgtgttcgtgcc
aatgaacaacaggccattggtttcttacgtgatcctcgtcgtctaaacgtgggtctaacc
cgtgccaaatatggtctagttattcttggtaatcctagatctttggcaagaaacacatta
tggaaccatctgttaatccacttcagagagaagggttgtttagtcgaaggtacgttggat
aacttacagttatgcactgttcaattagttcgtcctcagccaagaaagactgaacggcca
atgaacgctcaatttaacgtagaatctgaaatgggtgactttccgaagttccaggatttt
gatgcacagagtatggtgtcattcagtggtcaaattggggactttggtaatgcatttgtt
gacaacacagaactttcttcttacatcaataatgaatattggaattttgagaattttaaa
agtgctttttctcaaaagcaaaatcgcaatgaaattgacgatagaaatttgtaccaggag
gaggcttctcatttgaactctaacttcgcgagagagttacagagagaagaacaaaagcat
gaattgtcaaaagacttcagcaatttgggaatataa
DBGET
integrated database retrieval system
