Saccharomyces cerevisiae (budding yeast): YNR006W
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Entry
YNR006W CDS
T00005
Symbol
VPS27, DID7, GRD11, SSV17, VPL23, VPT27
Name
(RefSeq) ESCRT-0 subunit protein VPS27
KO
K12182
hepatocyte growth factor-regulated tyrosine kinase substrate
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03250
Viral life cycle - HIV-1
sce04144
Endocytosis
sce04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
YNR006W (VPS27)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
YNR006W (VPS27)
04145 Phagosome
YNR006W (VPS27)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sce04131
]
YNR006W (VPS27)
Membrane trafficking [BR:
sce04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-0 complex
YNR006W (VPS27)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VHS
Vps27_GAT-like
FYVE
UIM
FYVE_2
GAT
PAZ_2
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
855739
NCBI-ProteinID:
NP_014403
SGD:
S000005289
UniProt:
P40343
Structure
PDB
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All DBs
Position
XIV:636986..638854
Genome browser
AA seq
622 aa
AA seq
DB search
MSVSTPSELDALIEQATSESIPNGDLDLPIALEISDVLRSRRVNPKDSMRCIKKRILNTA
DNPNTQLSSWKLTNICVKNGGTPFIKEICSREFMDTMEHVILREDSNEELSELVKTILYE
LYVAFKNDSQLNYVAKVYDKLISRGIKFPEKLTLSNSPTAMFDSKTPADWIDSDACMICS
KKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYDLKRHDDSKKS
KKHRHKRKKDRDYSTPEDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEE
EEDPDLKAAIQESLREAEEAKLRSERQKASRQMQPQQPSPQPQPIHSVDLSDEEKDSIYM
FASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEI
MNIYDRLLEQQLQSINLSQQYTLPQVPSDPYNYLTENVQNPAESYQTPPLQQLSSHQYKP
QQDVSRQQSVKANSSPTTNIDHLKTIDVTPHAQQKPQSHVELAPSDPPYPKEEAEDEGTQ
AVQDEESSTQESRERPYPVETENGETSINKRPQGITRYDFPTVPARKFVQPESTVPLPAS
SSEIPIKEERPPSPQEELLIEL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttagcacgccaagtgagttagacgcattaatagaacaagccactagtgagagc
attcccaacggtgaccttgatctccccatagcgttggaaatttcagatgtgttaagatct
agaagggtaaatcccaaagattctatgcgttgtataaagaaaaggattctcaatacggcc
gataatccaaatacccaattgtcttcctggaagcttaccaatatatgtgtaaaaaatggt
ggaacgccttttattaaggaaatttgttccagagagttcatggataccatggaacatgtc
attttaagagaagatagcaacgaagaactttctgagctggtaaagaccatattatatgaa
ctatacgtagccttcaaaaatgattcgcaacttaactatgtggcaaaagtttatgataaa
ttaatctctcgtggcattaaattccctgaaaagctaacactttccaattctccgactgca
atgtttgactcgaagacgcccgcagattggattgattctgatgcttgtatgatttgctcc
aaaaagttttctctactaaataggaaacatcactgtcgttcctgtggtggagttttctgc
caagaacactcatcaaatagtatacccttacctgatttgggtatatatgagccagtcaga
gtatgtgatagctgctttgaagattacgatttgaagagacatgacgacagtaaaaaatct
aaaaaacatcgccataaaagaaagaaggacagggactactcaactcctgaggatgaagaa
gagctgataaggaaagcaatagaactctccttgaaagaatctagaaatagcgctagtagc
gagcctattgtccccgttgtagaatcaaagaatgaggtgaagagacaagaaatagaagaa
gaagaagatcctgatttaaaagctgctattcaggaaagcttgagagaagctgaagaagcg
aagctacgcagtgagcgtcaaaaagcctctagacagatgcaaccccaacagccatcacct
caacctcaacctatccattccgttgatttatctgatgaggagaaagacagcatatacatg
tttgcttcacttgtcgaaaaaatgaaatcgaggcccttgaacgaaattttggaagactct
aaattacaaaacttggctcaaagagtatttgcttccaaagcaaggttgaattatgcttta
aatgataaagctcagaaatacaatactttgatagaaatgaacggcaagatttcggaaatt
atgaacatatacgatagattattggagcaacagctacaaagcatcaatttgtctcagcaa
tacacacttccacaagtcccttctgatccgtacaattacctaacagaaaatgtgcaaaat
ccagcagaaagctatcaaacacctcccctccagcaactatcatctcatcaatacaaacca
caacaggatgtctcacgccaacaatcggtaaaagcaaattcatcacctaccactaatatt
gatcacttgaaaaccatcgatgtgacaccacacgcacagcaaaagcctcaatcgcacgtt
gaacttgcaccttcggacccaccttatccaaaagaagaggccgaagatgaaggaacacag
gcagtgcaagatgaggaatcctccacacaagaatcccgcgaaaggccgtatccagtagaa
acagagaatggtgaaacttcaataaataaacggcctcaaggcattacacgttacgatttt
ccaactgttcctgcacgcaaattcgtccaaccggagtcaactgtaccacttcctgcaagt
tcctctgaaattccgatcaaagaggaaaggccgcctagtcctcaagaggaactgctaata
gagctttaa
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