Sphingobacterium cellulitidis: ACF3OC_10400
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Entry
ACF3OC_10400 CDS
T11786
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scel Sphingobacterium cellulitidis
Pathway
scel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACF3OC_10400 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scel03019
]
ACF3OC_10400 (recQ)
03400 DNA repair and recombination proteins [BR:
scel03400
]
ACF3OC_10400 (recQ)
Enzymes [BR:
scel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACF3OC_10400 (recQ)
Messenger RNA biogenesis [BR:
scel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACF3OC_10400 (recQ)
DNA repair and recombination proteins [BR:
scel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACF3OC_10400 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
RQC
ResIII
HTH_40
RNase_H_2
HTH_PafC
Motif
Other DBs
NCBI-ProteinID:
XID70237
LinkDB
All DBs
Position
complement(2335375..2337564)
Genome browser
AA seq
729 aa
AA seq
DB search
MEIEKSLFDNLQDFFGFDTFKGDQEAIITNVLNKKDTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQVRAFGGRDSIAHFLNSSLTKNEIQRVKQDVQDGKTKLLYVAP
ESLAKEENVQFLKSITVSFVAVDEAHCISEWGHDFRPEYRKIRQVINDIGENIPIIALTA
TATPKVQSDIRKNLQMTDASLFKSSFNRTNLYYEVRPKEDVIKQIVRFIKSNSGKAGIVY
CLSRKKVEEIAEVLNINGIKALPYHAGLDAKTRAETQDKFLMEDIEVIVATIAFGMGIDK
PDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGYCLAFYSEKDVEKLTKFMKDKPVSEKEI
GTQILKEVIDYSESAVCRRKQILHYFGEKFDETGCNSMCDNCRAAKTYFDAEQPLLTVLN
FIKEEGDKFDDQHIINMLIGQNNQPISKYKHDTHALFGSGKEQGVNFWNSLIRQAELADF
IKKDIDHYGLLQLTPGGKKYINNPYPLKFILNKPMEMSKADSSEDAGGQTGALDTELLKM
LKDLRKKIAKQKSLPPFVIFQDPSLDEMCTHYPISMDELKQIQGVGSGKAMKFGAPFIDL
IKKYVDDNDIDRPQDLVIKSTANKSALKVSIIQNIDRKISLEDIASAKGISYEDLLREVE
SIVNSGTKLNIGYFVDEMIDQDRQDEVYDYFKTAENDGIDTALDELGEEDYSFEDIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaaaaatcacttttcgataatcttcaagatttttttgggttcgatactttt
aaaggcgatcaggaagcaattattacaaatgttcttaataagaaagatactttcgtaatt
atgccgaccggtggcggaaagtcaatctgttatcagttgccagctctgatgagcgaaggt
actgctattgttatttctccgctaatcgcgctgatgaaaaatcaagtcgaccaagtccga
gccttcggtggtagagatagtatagctcactttttgaactcttctcttaccaaaaatgaa
attcagcgcgtcaaacaagatgtgcaagatggtaaaacaaaactcctctatgttgctcct
gaatccttggcaaaggaagaaaatgtgcaattcctgaagagtattacagtttccttcgtc
gctgtcgatgaagctcactgtatctccgaatgggggcacgatttcagacctgaatatcgt
aaaatccgccaggtaatcaatgatataggtgaaaatatccctattatcgctcttactgca
actgctacccctaaagttcaatctgacattcgcaaaaatttgcaaatgactgatgctagc
ttgtttaagtcttctttcaaccgtactaacttgtactatgaagtaagacctaaagaagat
gtcatcaaacagattgttcgttttattaaaagtaattctgggaaagctggtattgtttat
tgtttgagccgcaagaaggtagaggaaatcgctgaagtccttaatatcaacggaattaag
gctttaccttaccacgctggattggatgccaaaaccagggcagaaacgcaagacaaattc
ttgatggaagacatcgaggttattgtcgctacgatcgccttcggaatgggaatcgataaa
ccggatgtgcgatatgtcattcaccatgacatccctaaatcaatggaaggctactaccag
gaaactggacgtgctggacgggatgggggtgaaggttattgcttggctttctactccgaa
aaagatgtcgaaaagctaacaaaattcatgaaagataaacctgtttctgaaaaggaaata
ggtactcaaatattaaaagaggttatcgactattcggaatctgccgtttgtcgtagaaaa
caaatccttcattatttcggcgaaaagtttgatgagactggttgtaattcaatgtgtgat
aattgtagagcagcaaaaacttattttgatgctgagcaacctctcttaactgtcttaaac
tttattaaagaggaaggcgataagtttgatgatcagcacattatcaatatgttgattggt
caaaataatcaaccaatatctaaatacaagcatgatacacatgcgctatttggatctgga
aaggagcaaggggtcaatttttggaactccttgattcgtcaggctgaactcgctgatttt
attaaaaaggatatcgaccattatggcttactgcaattgactccaggtgggaaaaaatat
atcaataacccatatccattgaagtttatcttaaacaaaccaatggaaatgtccaaagca
gattcttctgaagatgctggcggccaaactggcgcattggatactgagttgttgaaaatg
ctgaaagacctgcggaagaaaattgcaaaacagaaatcattgcctccgtttgtaattttc
caagacccttccctggacgaaatgtgtactcactatccaatatctatggatgagttgaag
caaatccaaggggtaggctcaggtaaagccatgaagtttggagctccttttattgatttg
atcaagaaatatgtggatgataatgatattgatagaccgcaagatttggtgattaaaagc
accgcgaataaatcggcgttaaaagtatccatcattcaaaatattgatagaaaaatcagt
ttggaagatattgcatccgctaagggtattagttatgaagacttattacgtgaagtagaa
tctatcgtaaattccggaacaaaattgaatattggatattttgtcgatgagatgatcgat
caagatcgtcaggatgaagtctatgactattttaagactgctgagaatgatggtattgat
acggccttggatgaactaggagaggaggattactcctttgaagacatccaattgatgcgt
atcaaatttatgtcggaactaggtaattaa
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