KEGG   Squalius cephalus (European chub): 307146465
Entry
307146465         CDS       T11930                                 
Symbol
kdm4c
Name
(RefSeq) lysine-specific demethylase 4C isoform 1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
scep  Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:scep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:scep03036]
    307146465 (kdm4c)
Enzymes [BR:scep01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     307146465 (kdm4c)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     307146465 (kdm4c)
Chromosome and associated proteins [BR:scep03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    307146465 (kdm4c)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H JmjN PHD_2 PHD Tudor_5 Rad9_Rad53_bind
Other DBs
NCBI-GeneID: 307146465
NCBI-ProteinID: XP_079706598
LinkDB
Position
2:complement(48893367..48917466)
AA seq 1502 aa
MAGVGESALANPACKIMTFRPTMEEFKDFNQYLVYMESQGAHRAGLAKVIPPKGWKPRRN
YDDIDDFVIQAPIQQMVAGQSGLFTQYNIQKKPLTVQEFRRLANSDMYCTPRYLNYEDLE
RKYWKNLTFVSPIYGADVSGTLYDEDIEEWNIGHLNSILDVIEEDCGVSIQGVNTPYLYF
GMWKTSFSWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAIGFFPNSFKSCEAFL
RHKMTLISPSVLKKYSIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFASLRWIN
YGKVATQCTCSKDMVKISMDPFVRRFQPDRYQAWTQGKDSCSLDHTLATPSTTPELQSWL
QRRRRKSPSTTSLHYPRTCSKRLKTVDTALEKGGSRRSRGSALTSKDKEEEDPVKRQKES
QFPTELKGLTGPCRQMCVVKVTRVESDLLAHSTSQVKDASPERLSTSPLTSTSSQSDPDP
GHASSQTPVNLDEGRVTTNTVSTAKPGPEPTSESDIPVDVTLDSERTAESPNQTDCESVS
GISAPSVPVTHSQRRSSTGAAVLFSESDSQQAKFEMEETVADILSESSIDYGTSALYKEQ
SSIRLHSTLQDSETLENRTNFEIQTAPFCEMPLLMPELTDERVNPHSHAPEMPSLTLAVR
PDTANHRPHSPSSTVPVLLLEKSHAPPVITDDVGTCSEKACPNWPIVPQEGVSQSFNNSI
SDTFIAKPASPSMVSQWEPPEESKQEGHKHTCPSTDQNTQHESVSQFKITTHSILQRPTV
ADMDFIDARNSNNSAEGGDKQTSMSFEEQSSSLTSSHGPFVESKPFTIWKNLSSQNPAVL
IESLQPELVMGLTTGVNSLTEYSHDSLPYTMWSESGCQQEKFPDSPNSSPCTQTWTNLEP
IPMQCSGADVALNTPIDLKQQNVEMVPAVACVLGEQTGSQETQEEEFKGQEYYEGVKSEH
DGSVSDSDSCESGDKGADSSSESSEENAMSDPEYVETGLEPGEVCTYHMQTVKKTTKSWR
HPLRKPTARAVPSAVKQQAASDDETVEECETKEEEPETEEWAKPLVHLWQQRKAHLQYER
EYNTAAAQTAPHCAVCTLFMPYYQPENLEERRHDVLMNPATESQGSCSQVAGLRSRPLIP
EICFAYQEGPCPSNTLLEEDGSSPLVACNSCCVQVHASCYGVSIHDVGPVWTCDRCVSGD
LAAGCCLCNLRGGALKRTSDDRWAHVMCAVGLPEVKFIDVVKRAPIDISAIPVQRYKLKC
IYCRNRIQKLSGACIQCSCGRCPTSFHVTCAHAAGVPMEPDDWPYVVFITCHRHQSRSSS
AKLKVSRSELEVGQTVISKHKNLRYYSSRVTQVTAQTFYEVMFDDGSFSNDTFPEDIVSR
DCTQLGPPEVGEAVQVKWPDGLFYGAKYLGSNTSYMYQVEFEDGSQVLAKREDIYTLDED
LPKKVKGRLSTASSMRFQDAFFTTQGERKRRRTPNSRFQTDYIAHISPRTFARITETHSK
AN
NT seq 4509 nt   +upstreamnt  +downstreamnt
atggcaggtgtcggggaaagtgccctggctaaccctgcctgtaagatcatgaccttcaga
cctaccatggaggagtttaaggacttcaaccaatacctggtgtacatggagtctcaggga
gcacatcgtgctggtctggccaaggtaattccacccaagggctggaagccacgtcgcaat
tacgatgatattgatgattttgtcatccaagcacctattcagcagatggtagctggccaa
tcaggactcttcacccagtacaacatccagaagaaaccactcactgtgcaagaattccgt
agactggccaacagtgacatgtactgcacacctcgctacctgaactatgaagacctggag
aggaaatactggaagaatctcacctttgtctcgcccatctatggtgctgatgtgagcggc
acgctctatgatgaggacattgaagaatggaacatcgggcacttgaactcaatcttggac
gtaatcgaggaggactgtggtgtgtccattcagggagtaaacacaccctatctgtacttt
ggcatgtggaagaccagcttctcctggcacacagaggacatggacctctacagcattaac
tacctgcactttggcgagcccaaatcctggtatgccatccctccagaacacgggaagaga
ttggagcgtcttgctataggtttctttcctaacagctttaaaagctgtgaggcgttcctg
agacacaagatgacactgatatccccctctgtactaaagaaatacagcataccatttgat
aagataacacaggaagcaggggagtttatgatcacatttccctatggttaccacgctggc
ttcaaccatggcttcaactgtgccgaatccaccaattttgccagtctccggtggattaat
tatggaaaagttgctacgcagtgtacatgcagtaaggacatggtgaagatttccatggat
ccgtttgtcagacgattccagccggatcgctatcaggcttggacacaaggcaaagactca
tgctcattggatcacaccctggccacacccagcaccacaccagagctgcagagctggctt
cagagacgtcgcaggaaatcaccctccaccacaagtctccattatccacgcacatgctcc
aaacgattgaagactgtggacaccgcactagagaagggaggaagtcggaggagtagaggg
tcagctttaacatcaaaagacaaggaagaggaagacccagtgaaacgccaaaaagaatcg
cagttcccaactgaattaaaagggctcactggtccatgtcgacaaatgtgtgttgttaaa
gtaacaagagtggagagtgacttgctggcccactctacctcacaagtcaaagatgcttca
cctgaacgactctcgacttctccactcacttccacatccagtcagagtgaccctgatcca
ggtcatgcaagctcccagacgcctgtaaatttggatgaaggtcgagtaaccacaaacaca
gtctccaccgcaaagcctgggcctgaaccaacctcagagagtgacatccctgtggatgtg
actctggactcagaaagaactgctgaaagtcctaatcaaacagactgtgaatctgtctca
ggaataagtgcaccttctgttcctgtgacccattcacagagacgtagctctactggtgct
gcagttttattttcggaaagtgattcccaacaggctaaatttgaaatggaagagacggtc
gccgatatcttgtctgagagcagcatcgattacggcacatcagcactttacaaggagcaa
agctcaatccgtctacactctactcttcaggattcagaaaccttggagaacagaacaaac
tttgaaatccagactgcccctttttgtgaaatgcctcttctaatgcctgagctcacagat
gagagagtcaatcctcactctcacgcacctgaaatgccctcgctgactctcgctgtacga
cccgacaccgcaaatcaccgacctcacagtccgagcagtactgtacctgttctccttctg
gaaaaatcacacgcacctcctgttataacagatgatgtggggacttgttctgaaaaagct
tgtcccaattggccaattgtaccccaagaaggtgtgagccaatcgttcaataactcgatc
tcagacacctttatagcaaaaccagcatctccttctatggtgtcacagtgggagccacca
gaggagtccaaacaggaaggacataaacacacatgcccatccacagaccagaacactcaa
catgagtcagtttcgcagtttaaaatcactactcacagtattttacaacgtcctacagta
gcagacatggattttatagatgcccgcaactctaataactcagcagaaggaggggacaaa
caaacttctatgtcttttgaagagcagtccagctctctcacatcctcccatggccccttc
gtggagtccaaacccttcaccatttggaaaaacctcagctcccagaatcctgcagtgcta
attgagagcttgcagcccgagttggtaatgggtcttaccacaggtgtaaacagtctcaca
gaatattcccatgactctctgccctacaccatgtggtctgaatcagggtgccaacaagaa
aagttcccagattctccaaactcttcaccatgcacccagacctggaccaacctggagccc
attcccatgcagtgctctggtgcagacgttgctcttaacacccctatagatctcaagcag
cagaacgtcgagatggtaccagctgtagcttgtgtgcttggtgagcagacaggctctcag
gaaactcaggaggaagagtttaaagggcaggagtattacgaaggtgtgaagtcagagcat
gatgggtctgtgagcgactctgattcgtgtgaatcgggagataagggtgcggacagcagc
agtgaatccagtgaggagaatgccatgagtgaccctgagtatgtggaaacgggcctggag
ccaggggaagtctgtacatatcacatgcaaactgttaagaagactaccaagagttggcgt
caccccctcagaaagcccactgcaagagcagttcccagtgctgtgaaacagcaggctgcc
agtgatgatgagactgtagaggagtgtgaaactaaagaagaggagccagaaactgaggaa
tgggcaaagcctttagtgcatctgtggcaacagagaaaagctcatcttcaatatgaacga
gaatacaacacagctgcagctcaaactgctcctcactgtgctgtctgcacccttttcatg
ccatactatcagcctgagaatttagaggaaagaaggcatgatgtcttgatgaatcctgcc
acagagtctcaggggtcgtgttcacaggtggcaggcttgagatcgcgacctctgatccct
gaaatttgctttgcataccaggagggcccatgcccttcgaacacactactggaggaggat
ggatccagtcctcttgtggcctgcaacagttgctgtgttcaagttcatgccagttgctac
ggtgtttctattcatgatgttggcccagtgtggacatgtgaccgatgtgtgagcggagac
ctggcagctggatgctgtttgtgtaacctgaggggaggtgcattaaagagaacctcagat
gacaggtgggcccatgtgatgtgtgctgtgggtctccctgaggtgaagttcatagatgtg
gtgaagagagctcctattgacatcagtgccatacctgtacagagatataaactgaagtgt
atatattgccgtaacaggatacaaaagctatctggagcatgtattcagtgctcatgtggc
cgttgccccacctctttccatgtcacctgtgcacacgctgctggagtgcccatggagcct
gatgattggccatatgtggtttttatcacctgtcacagacaccagtcacggagctccagt
gctaaattgaaagttagcagaagtgaattagaagtgggccagacagtgatctccaaacac
aagaatcttcgttactacagctcacgtgttacccaggtcacggcccaaacattctatgaa
gtcatgtttgatgatggctcattcagcaatgatacattccctgaagacattgtaagcaga
gattgtacccagcttggacctcctgaagtgggggaggctgttcaggtgaagtggcctgat
ggacttttttatggagccaagtaccttggctctaacacttcatatatgtaccaggtggaa
tttgaagatggatcccaagtattggcgaagagagaggacatttatacactggatgaagac
ctgcccaaaaaagtcaaaggtcgtttgtccacggcatccagcatgcgtttccaagatgca
ttctttaccacacaaggtgaaaggaaaaggcgacgcactccaaattctcggttccagacg
gattatatcgcccatatcagccctcgaaccttcgccaggatcacagaaacgcacagcaaa
gccaactaa

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