Squalius cephalus (European chub): 307146960
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Entry
307146960 CDS
T11930
Symbol
mgrn1a
Name
(RefSeq) putative E3 ubiquitin-protein ligase MGRN1 isoform 1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
scep Squalius cephalus (European chub)
Pathway
scep04120
Ubiquitin mediated proteolysis
scep04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
307146960 (mgrn1a)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
307146960 (mgrn1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scep04121
]
307146960 (mgrn1a)
Enzymes [BR:
scep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
307146960 (mgrn1a)
Ubiquitin system [BR:
scep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
307146960 (mgrn1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C3HC4_3
RNF157-like_N
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
307146960
NCBI-ProteinID:
XP_079707474
LinkDB
All DBs
Position
19:complement(19350675..19364039)
Genome browser
AA seq
554 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFTSHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDSTPEDTGDPKVLYSV
EFCFDTDARVAITLYCQAFEEFANGMAIYSPKSPSMVSETVHYKRGINQQFCLPSFKIDF
TKWKPEELNFDLDKGVFPLVIQAIVDDGDDVTGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENRNNLETKSTEDENSDNSSECVVCLSDLRDTLILPCRHLCLCNAC
ADTLRYQANNCPICRLPFRALLQIRAVRKKTAAALSPVSFSPVLSQSSDHTEHSNADNIP
PGYEPISLLEALNGVQPMSPSIPSAPLYEEIQFSGEMGDPLNLTGRQQNADPASMKGKGS
KSPDGSTRSPSSPIQEEEDEERMSELSDTQPQSVLPCSLSPTEATGEGVATNPGFPNSGS
DSRSLGVSVSEILQDCHSERSSLSRTESDPSADLALPGSSESIESLKSQSTSSSSQPLLC
LPSTLRMEDERLAS
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaatactgagtcgaaggattgctggagttgaagacatcgatattcaagccaac
tcagcgtacagatatcccccaaaatcaggaaattatttcaccagtcattttttcatgggt
ggagaaaagtttgacacaccccatccagagggatatctttttggggaaaatatggatttg
aatttccttggcaacagacctgtgcagtttccctatgtgactccagcaccacatgagcct
gtcaagacgctaaggagtttggtgaacatcaggaaggattctttacgtcttgtcaggtat
aaggatgattctgacagcacaccagaggacacaggcgaccccaaggtcctttacagtgtt
gaattctgctttgatactgatgccagagtggctattacattatactgtcaagcctttgag
gagtttgccaatgggatggcaatatacagccccaagagcccttcaatggtgtctgagacg
gtccattataagagagggattaatcagcaattttgtctgccatccttcaagattgatttc
accaaatggaagcctgaagagctgaactttgatctggacaaaggcgttttccctttggtg
atccaagcaatagtggatgatggagatgatgttaccgggcatgcacatgttcttttggca
gcttttgaaaggcatgttgatggcagtttctcagtgaagcctttgaaacagaagcaaatc
gtggaccgtgtgagctatctgctgcaggagatttacggcattgaaaaccggaacaatctg
gagacaaagtccacagaggatgagaacagtgacaacagcagtgagtgtgtggtttgttta
tcagacctgcgtgacacactgattctcccttgcaggcacctgtgtctgtgcaatgcctgt
gctgacacactgcgttaccaggccaacaactgccctatctgcagactgccattcagagcc
ctgctccagatccgagccgtgaggaagaaaacagccgccgctctttccccggtttccttt
agcccagtgctgtcccaaagctctgaccatactgagcattcgaatgccgacaacatccct
cccggctatgagcccatctccctgcttgaagccctgaatggggtgcaacccatgtcccct
tccatcccatcagcacctctctatgaggagatccaattttcgggggagatgggagatccc
ctcaacctgactgggcggcagcaaaacgcagatcccgcatcaatgaagggcaaaggtagc
aagtcaccagacgggtctacacgttctccctcatcccccatacaggaggaggaagatgag
gagagaatgtcagaactctctgatacccagcctcagtctgttctgccttgcagtctcagt
cccactgaggccacaggagagggtgtggccaccaatcctggtttcccaaattcaggttca
gacagcagatcactgggggtgtctgtgagtgaaattctacaggactgccacagtgagcgc
agcagcctgagccggacagaaagtgacccctcagcagatctggccctgcctgggtcatca
gagtccatagaaagcctgaagagtcagagcaccagcagctccagtcagcctctgctctgc
ctccccagcaccctccgcatggaagatgagcgtctcgcttcataa
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