Squalius cephalus (European chub): 307146972
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Entry
307146972 CDS
T11930
Symbol
pax5
Name
(RefSeq) paired box protein Pax-5 isoform 1
KO
K09383
paired box protein 5
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scep03000
]
307146972 (pax5)
Transcription factors [BR:
scep03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
307146972 (pax5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAX
Pax2_C
HTH_23
HTH_32
Homeodomain
DUF6115
Ribosomal_S13_N
HTH_Tnp_IS1
Motif
Other DBs
NCBI-GeneID:
307146972
NCBI-ProteinID:
XP_079707505
LinkDB
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Position
2:complement(48985109..49038525)
Genome browser
AA seq
423 aa
AA seq
DB search
MDLDQKGPSLRIGRSGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
SHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLA
ERVCDNDSVPSVSSINRIIRTKVQQPPGQSGAISAHNLASTVAVTQVSSVTSDTAGSSYS
ISGILGISSPADASKRKRDETLQDSPLANGHAHSGRDFLRKQMRGELFTPQQLEVLDHVF
ERQPYPDFYPVPDSISYKPAQTSDYSAMASLAGGLEEMKNSLANQTGAELGSTVAGPQSY
PLVSGRDLASTTLPGYPPHVPPTGQGSYSTPSLTGMVPGGDFSGSPYSHPQYSTYNDSWR
FANPSLLVFQQEYGSLLGSERAASSGLFSGQTPQPTGSPYYYSAATRGPGTAATATATAY
DRH
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggacttggaccaaaagggtccatctctgcgcatcggacggtcggggcatggaggggtg
aatcagctgggtggggtgtttgtaaacgggcggcccttgcctgacgtggtgaggcagagg
atagtggagttggcccatcagggcgtacgtccatgtgacatctcccgccagctccgggtc
agccacggctgcgtcagcaagatactgggcaggtactatgagacaggcagcatcagacca
ggggtgatcggaggctccaaaccaaaggttgctacacccaaagtcgtcgacaaaatcgct
gattacaaacgccaaaaccccaccatgtttgcctgggagatccgagacagactgctggca
gagagagtgtgtgacaatgacagcgtgcccagtgtcagctcaatcaacaggatcattcgc
actaaagtccagcaaccacctggccaatcaggagctatctctgcccataacttagcctct
acagtggcagtgacccaggtatcctcagtaaccagtgacactgcaggctcctcctactct
atcagtggaattctgggaattagctcacctgccgatgcaagcaagcggaagagagatgaa
actctacaggattctcctttggcgaatggccacgcccattcagggcgggacttcctgcgg
aagcagatgcgaggagagctctttacgccgcagcagctcgaggtattggaccatgtcttt
gaacgacagccctatcctgacttttaccccgtccctgacagcatcagctacaagcccgcc
cagacgtctgattactcagctatggcatctctggctggtggattggaggagatgaagaac
agcttggccaatcagacaggagcagagttgggttccactgttgcgggacctcaatcgtat
ccactagtgtccggtcgtgacctggccagcaccacgctccccggttaccctcctcatgtt
cctccaactgggcagggtagttactccacaccctccctcacagggatggtacctggagga
gatttctctggcagtccatactcccatccgcagtattcgacatacaatgattcttggaga
tttgcaaaccccagtctactagtgttccagcaggagtacggttctttactgggctcggag
agagcagcttcatcgggtctattctccggccaaactccacaacccacaggatctccatac
tactatagcgcagccacacggggaccaggaacggcagctacagcaactgccactgcctat
gaccgtcactga
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