Squalius cephalus (European chub): 307147799
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Entry
307147799 CDS
T11930
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
scep Squalius cephalus (European chub)
Pathway
scep03013
Nucleocytoplasmic transport
scep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
307147799 (srrm1)
03015 mRNA surveillance pathway
307147799 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scep03019
]
307147799 (srrm1)
03041 Spliceosome [BR:
scep03041
]
307147799 (srrm1)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
307147799 (srrm1)
Spliceosome [BR:
scep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
307147799 (srrm1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
307147799
NCBI-ProteinID:
XP_079708912
LinkDB
All DBs
Position
20:21026476..21039111
Genome browser
AA seq
923 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDDDKREKEIKERAQSKSPKRRKSRSPVKRDRKS
SPSRSPRRKPSPAALPPSSPPNNKEEPKQEPDQSESSKPEPLIEEASSTSDLVVEMKPDS
MSEAVKESSPDKTSKSEDRPKPRDRDKDGRRDRPRHRSRSRSPRSRKRPRSRSRSFSPRR
RSPRRRISPRRRSPPRRRPPSRHRRSRSPVRRRRSRSRSSSGSSSSRSPHKRAGKRRSAT
PPRKLPRRLDPVSPSRRRGRSPSGPDTSPSAVKHRPGGRNDTPSPKPRRSDASESEEEKV
GKGSTADSVQQRRQYRRQNQQSSSDTGSSSSSEDEGPRRQNRGAGARNGEIRRRRSHSPA
SPRRRHRDASPRKRRSPSPAGRRHRSPSPVRRRRSPSPPPRRRSPSPPHRRFTPPIQRRY
SPSPPPAQKRRSSGSPPKRRRSPSPVSKNRGSPSPVPKRRGSLSPVSKRRGSPSPLSKRR
GSPSPVSKRRGSPSPMSKRRGSPSPVSKHRGSTSPMSKRRASPSPVAKRRASLSPVAKRR
GSPSPMAKRRSPKRNRGSSPGKRRTPPTSASPPPRHRRSSPNPSAAQRGRDARSSPPAHS
TRVSSSPPARYGPSSLSPQRQRRQTSPSHSTRPIRRVSRTPEPRKSQRGSQSPQPVRRQV
SHSPSASPPPPPTAHKRPASVSPSRSASRSPPPPAKKNSSVSPSPSPNKNSDVEGGKKKK
KKKEKKHKKEKKHKKHKKQKKEKSGEEKSGGAAGAHGQEAEPDSDQKKESESEVEDSLDD
LEKHLREKALRSMRKAQMSPSQS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagtgcggagcaggataaccgcttcagcaacaaa
cataagaagctgttgaagcagctgaagtttgcagaatgtctggagaagaaggtggatatg
accaaggtcaacctggaagtcatcaagccctggatcacccagcgcgtgacagagatcctt
ggctttgaggatgacgtcgtcatcgaatttgtcttcaaccagctggaggaaaagaacccg
gatgggaagatgatgcagattaatttgacagggtttttgaatgggaagaacgctcgagaa
ttcatgaaggacctctggccgctgttgctaagtgcccaggagaacatcgcaggtatcccg
tctgctttcctggagcaaaagaaagaggagatcaaacagagacagatcgaacaggagaaa
ctcgcctctctgaaaaaaatagatgacgataaaagggagaaggagatcaaagagcgagct
cagtcaaaaagccctaaacggaggaagtcccgctcccctgtgaagcgtgatcgtaaatcc
agtccctctcgctctcctcgccgaaaaccgagcccggctgccttgcctccttctagtccg
cccaataataaagaagaaccaaagcaagaaccggaccaatcagagagctccaaaccagag
cctctaattgaggaggcttcctctacaagtgatctggtggttgagatgaagccggactcc
atgtctgaggctgtgaaagagtcctctccagacaaaacatcaaaatcagaagacaggccc
aaacccagagacagggataaggatggacggagagatcgcccgcgccaccgctctcgctct
cgatcacctcgttctcgcaaacgacctcggtcccgctctaggtcgttctctcctcgccgc
agaagtcccaggaggcgaatctctccgagacgcaggagcccccctagacggcgacctccc
tccagacatagacgtagccgatcacctgtccgcaggcggcgctctcgctcccggtcctcc
tcaggcagctcctcctctcggtcaccccataagagagcagggaagcgtaggtcagctaca
ccgcccagaaaacttccacgccgtttggaccccgtcagcccctccagaagacgaggccgc
agtccttcaggaccagacaccagcccttcagctgtgaagcacaggcctggtggaagaaat
gacactccttctccaaaacccagacggtccgatgcatcagagtctgaagaggagaaggtg
ggcaaagggtcaacagcagattctgtccagcagcgtcgtcagtatcggagacagaatcag
cagtcctcttcagacactggttcatcctcttcctctgaagatgaaggtccaaggaggcaa
aatagaggggcaggtgccaggaatggagaaatcagaaggcggcggagccattcacctgca
tcaccacggaggcgacacagagatgcatccccaagaaagagacgttctccatcacctgct
ggccgtagacatcgttcaccatctcctgttcgccgccgcaggtcaccctctcctccccca
aggcgcagatctccatctccacctcaccggcgtttcactcctcccatccagcgcagatac
agtccctcccctcccccagctcaaaaaagacgctcatcagggtctcctcccaagcgtaga
aggtctccatcccctgtatccaagaatagagggtctccttcacctgtgcccaaaaggaga
ggatctctttcaccagtttcaaaacgcagaggttctccttcacccttgtccaagaggaga
gggtctccttcacccgtttcaaaacgcagagggtctccttcacccatgtccaaacgcaga
gggtctccatcacctgtgtccaagcatagagggtctacttcacctatgtccaaacgcaga
gcgtctccctcaccagtggccaagcgcagggcatctctctcgccagtggcgaagcgtagg
ggatcaccctcccctatggccaaacgtcgatcccctaaacggaaccgtggcagtagtcca
ggaaaaagacgtactccgcccacttctgcttcgcctccaccccgccaccgtagaagctct
ccaaatccctctgcagcccaacggggcagggatgcccgctcctctccccctgcccactct
actcgagtgtcttccagtcctccagctcgatacggcccctcgagtttatccccgcagaga
caaagacgtcagacgtccccgtctcacagcaccagacccattcgcagggtttcccgcaca
ccagaaccacgcaaatctcagagaggttctcagagcccccagcctgtaaggcgacaggtt
tcacattcaccatctgcttctcctcctcctcctcccacggctcacaagcgacctgcttca
gtctcaccctctcgctctgctagccgttctccacctccacctgccaaaaagaacagcagt
gtctccccaagcccatcacctaacaagaactcagatgtagaaggtggtaagaagaagaaa
aagaagaaagagaagaaacacaagaaagagaaaaaacacaagaagcataagaaacagaag
aaggagaagagtggagaagaaaagagcggaggggcggcaggagcacacggacaggaagca
gagccagactctgaccagaaaaaggaatcagagagtgaagtagaagacagtttggatgat
ctggagaagcacctacgtgagaaagctctccgctcaatgaggaaggcccagatgtctcca
tctcagtcctga
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