Squalius cephalus (European chub): 307147935
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Entry
307147935 CDS
T11930
Symbol
syne3
Name
(RefSeq) nesprin-3
KO
K21761
nesprin-3
Organism
scep
Squalius cephalus (European chub)
Pathway
scep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
307147935 (syne3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
scep03036
]
307147935 (syne3)
Chromosome and associated proteins [BR:
scep03036
]
Eukaryotic type
Centrosome formation proteins
LINC complex
307147935 (syne3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin_SYNE1_2
KASH
SYNE3
Spectrin
SR_desmoplakin_3
DUF6918
Motif
Other DBs
NCBI-GeneID:
307147935
NCBI-ProteinID:
XP_079709165
LinkDB
All DBs
Position
20:15159925..15186914
Genome browser
AA seq
1122 aa
AA seq
DB search
MTQQEQHEFKECLEEALSWMQAVQERLKQNDNTQGPRSALEIRLRETEKINSSEPEGYVK
MDRVLVASEALLRNGDEEMKNQTHSKLKDLKALWEETLTYIIHCHSRIEWVWLHWSEYLK
AHEEFGIWLEKMHRALEPLLEMQVGLQEKLWQVDHLQVLHSDIQAQAQFLERLLDEAAAL
FNRTEDPSVNEQAQQGLQDAYNHIRDRAQERLASAQKVVEEHQQYQNCFHKFQTWLMSKT
EEVSRFSDMEDTTQNRLKALQELNASIAQEELTLQHIERLSEVVKANTSPAGAEKITKEM
EELRLAWQRLRQVLVENQEELQSSLDSESEYSNRCKELWADLGQIRSLVQNLSSELEIRD
GERTEEHLVAQWKTHTRVRNRLIAEEPGVEQLKSRLKELFRFPQDSKNLSDELLAVVKEY
QSVKGRSFRLCSESETSLRQILQDPLYGFSQWSQMVSQVLEASAEVTEFSHIALLVQNIE
KLLKNSVQLQERLSLLQVKSDLLSSVFGQEKAVDLLEELSGDMRKRELLHSQLQQRKNRL
QGLISKTKDFSNAYDSIHKKLTFIKERFVKTDGLQPDILAKKSQADQLRVIRKDLEDCEA
HIIALETLVSSNPANRTKFERLFADWKLLYKAVQMKVNESEENIAEHESLHENILNLEKW
LMIMRQKLESFRGSDGEWSIDNRQHEAERALGEFPEKELQLHQTEAQGQTVLAKTSEKGK
VHIVQDLKRLRESWTSLHALSLNLYRLLNGHAATGDQDSLSQKTEFLLDRWAGGHHQGTA
SDFEVGIATGDKGLEQHQRFLHRPESTDHPEPERNIEANPDQIRIVVSEGIARPGRSEVR
RREKTYRDQSMDDEVDAVMSGSDRTVNRMQIGIKGSYGDNLLRSGGRTGEWVEEHIASSG
IKDLDMQVKYGFSDDAQIPPEMTSAAYGSTDDYQMGSQGPQRHADLEAQKREFEAWLHKE
NDKLTGILNNQISLSAKELRIRQNTLKGLRAGVAWGQSQFTKLMSGQQSKSAEVDIELEE
LRYRWMLYKSKLQEAGDLRGLLKHKGVSGHEQELVRAGKTNSSLGFLYRVCRVALPLQLL
LLALLLLAFLLPMMDEGTSCSLSNNFARSFNIMLRYDGPPPT
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcaagagcagcatgagttcaaggaatgtttggaggaagccctgtcctggatg
caggccgtccaggagaggcttaaacaaaatgataacacccaagggcccagatcagcgctg
gagatcaggctccgagagacagagaaaatcaatagctcagaacctgaaggctatgtgaag
atggacagggtgcttgtggcttctgaagctctgcttcgaaatggagatgaagaaatgaag
aatcagactcattcgaaactcaaagatctgaaagcgctctgggaggagacgttaacctac
atcattcactgtcacagtcgtatcgagtgggtgtggctgcactggagtgaatacttaaag
gcccatgaggagtttgggatttggctggagaagatgcacagggctctggagcccctgctt
gagatgcaggtgggtctccaagagaagctgtggcaggtggatcatctgcaggtccttcac
agtgacatccaagcccaggctcagtttctggagaggctcctggatgaggctgcagccttg
ttcaaccggaccgaggaccccagtgtaaatgagcaggctcaacaaggtcttcaagatgcc
tacaaccacattcgagaccgagcacaggaaaggttggcatcggcacagaaagtagtagag
gagcaccagcaataccaaaattgctttcataaattccaaacctggctgatgtctaaaaca
gaagaagtcagccgtttcagtgacatggaggatacgacacagaataggctgaaagccctg
caggagctgaatgctagtatagcccaagaagaactcactctccagcacattgaaaggttg
tctgaggtggtgaaggccaacacgtctccagcaggtgcggagaagatcacaaaagagatg
gaggagttaaggctggcctggcagaggttacgccaagtgctggtggagaatcaagaagag
ctccagagctcactggactctgagagcgagtattcaaaccgctgtaaggagctgtgggcg
gacctggggcagatcagatccctggtccagaacctcagcagtgagctggagatcagggat
ggagagaggactgaggaacacttggtagctcaatggaagacgcacacgagggtgcgcaac
aggctcatcgcagaggagcccggggtggaacagctaaaatcccggttgaaagagctattc
cgattcccacaagattctaaaaacctgtctgatgagttgctagcagtggtaaaagagtac
cagagtgtgaaaggcagatctttcaggctgtgctctgaaagcgagacgagtctccggcag
atactgcaggaccctctgtatggcttcagccagtggagtcagatggtttctcaggtactg
gaggcttccgccgaggtgacggaattctcccatatcgctctgctcgtgcagaatatagag
aagttgcttaaaaacagcgtgcagcttcaggagcgcttgagtttgctccaggtgaagagt
gatctgcttagctctgtttttggccaagagaaggctgttgatctgttggaagagctcagc
ggggatatgaggaagagagagttactccacagccagctccaacagcgcaagaaccgcctg
cagggtttgatatcaaagacgaaggacttttccaatgcctatgactccatacataaaaaa
ctgaccttcataaaggaacggtttgtcaagacggatggacttcaacctgacattctagcc
aagaagagccaggccgatcaactccgggtcattagaaaggacttggaagattgtgaagcc
catatcatagctctggagacgctggtgtcatccaaccctgctaacagaacaaagtttgag
cgtctgtttgccgactggaaattgctttataaggcagttcagatgaaggtgaatgaaagt
gaggagaacattgcggaacatgagagtttacatgaaaacattctgaatttggagaagtgg
ttgatgatcatgagacagaagctggagtcgtttcgtggatcagatggggaatggagcatt
gataaccgccagcatgaggctgagagggcgctcggagagtttccagagaaggaacttcag
cttcatcagacggaggctcagggtcagaccgtgctggccaaaacctcggagaaaggcaaa
gttcacatcgttcaggaccttaaacgccttcgagagtcctggacgtccctccacgcgctt
agtctcaatctttacaggcttctaaatggacatgctgccacaggcgaccaagattcccta
tcacagaaaactgagttcctgctggacagatgggcaggcgggcatcaccagggcacagct
tcagactttgaagtgggaattgccacaggtgacaaaggactggaacagcatcagagattc
ctgcacagaccagaatcaacagatcacccagagccggagaggaacattgaagcaaatccg
gatcaaattcgaattgtggtctctgagggcatcgcaagacctggacgttcagaggtcagg
agaagagagaagacttaccgagaccagtccatggatgatgaggtggatgcagtcatgtct
ggaagtgaccgtactgtgaacaggatgcagatagggataaaaggctcttacggagataac
ttgcttaggagcggtggtcggactggtgaatgggttgaagaacacatagccagttctggg
attaaagacctggatatgcaagtcaaatacggcttttctgatgatgcacagatcccacct
gaaatgaccagtgctgcttatggctcaactgatgactatcagatgggctctcaggggccc
cagcgtcatgctgatctggaggcccagaagagggagtttgaagcgtggcttcacaaggaa
aatgacaaactcacaggaattctgaacaaccaaatatccctgagcgctaaagaactgagg
ataagacagaatacactcaagggtttacgtgccggtgtagcctggggtcagagtcagttc
acgaaactgatgtctggtcagcagagtaagtcagcggaggtggacatagagctagaagag
ctgcgctatcgctggatgttatacaaatccaaacttcaagaggctggtgacctcagaggt
ctgctcaaacacaagggtgtcagtggacatgaacaggagcttgtccgagctggaaagacg
aacagcagtctgggattcttgtaccgtgtgtgtcgcgtggctcttcctctccagctcctg
ctgttggctcttcttctgctggccttcctgctgcccatgatggacgagggcaccagctgt
tcactgtccaacaacttcgcccgctccttcaacatcatgctccgctacgacggacctccg
cccacctaa
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