Squalius cephalus (European chub): 307148006
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Entry
307148006 CDS
T11930
Symbol
aqr
Name
(RefSeq) RNA helicase aquarius
KO
K12874
intron-binding protein aquarius
Organism
scep Squalius cephalus (European chub)
Pathway
scep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307148006 (aqr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scep03041
]
307148006 (aqr)
Spliceosome [BR:
scep03041
]
Complex B
Other components
Prp19-related factors
307148006 (aqr)
Complex C
307148006 (aqr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
ResIII
AAA_30
UvrD_C_2
DEAD
UvrD-helicase
SLFN-g3_helicase
AAA
AAA_16
Parvo_NS1
AAA_22
PhoH
DnaB_C
NB-ARC
nSTAND3
ATPase
Motif
Other DBs
NCBI-GeneID:
307148006
NCBI-ProteinID:
XP_079709295
LinkDB
All DBs
Position
20:4566010..4635152
Genome browser
AA seq
1447 aa
AA seq
DB search
MQKDSRLIKTSAPSVAQINAEYVTQLSNKYWAPHVKNKLPFDSQVIEDIYQNEILKSKFA
VRKIMLLEFSQYLESYLWVNYTPEVSTNSYLMSICCIVNEKFRENVPAWEVFKRAPTHFP
HFFRCVMESCLSGEQLGLSLKEQTVLLLFLDHCFNSLEVDLIREQVQKLVSLPMWMCLLP
MRLQQELKKVPKLQKFWNLIKKNYEKMDPQDMEQAKKERTFLAALIKKFLLVLMSIPASG
SVSMEKVHYCERFIEFMIDLEALLPTRRWFNTLLDDAHLVVNCQLSHLTDREQEGHLFCQ
LLDMLKFYAGFEISDQTGNALTQKEMTTLHYDRITSLQRAAFAHFPELNDFALSNVAAVD
TRESLTKHFGHLSPNTLHRVSAYLCLLPELPEGEETSYEREFLLELLVSHHERRISQIEQ
LNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYE
IRQDIEDVVLRMKPWQSEYGGVVFGGWARMAQTILSFSIVEVAKPNIGENWPARVRADVT
LNLNIRDHIKNEWEGLRKHDVCFLITVRPNLPYGTRFERRQPFVDQAGLVYVRGCEVQGM
LDDKGRVIEEGPDPKPKLRGDTRTFRVWLDANQYQQDMTNSIQNGAEDPYETFNIIMRRK
PKENNFKAVLETIRNLMNTECVVPDWLHDIILGYGDPGSAHYSKMPNQISSLDFNDTFLS
IEHLKSCFPNHTVKVSEEDPARQVPPFRIRFPVQNVKAKKRKANEEEKRGEEDQTLVVEP
HVIPNRGPYPYNQPKRNTIQFTPTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNLY
HNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRMGHGEEELETEKDFSRYGRVNYV
LSRRLELLREVARLQDSLGVPGDVSYTCETAGHFYLYQVISRWEEYMSKVKPKPSREVPV
EDVASHFPFHKYFSNAPQPVFKGQSYQEDMDIAEGCYRHIRKIFTQLEEFRAFELLRSGL
DRSKYLLVKEAKIIAMTCTHAALKRHDLVELGFKYDNILMEEAAQILEIETFIPLLLQNP
EDGYSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRLGVPTVDLDAQGRARA
SLCNLYNWRYKQLGNLPHVQLQPEFQSPNPGFTYDFQLVNVEDFNGVGESEPNPYFYQNL
AEAEYSVALFMYMRLLGYPAERISILTTYNGQKHLIRDVINQRCANNSFFGQPNKVTTVD
RFQGQQNDYIILSLVRTKAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCYELTPAFS
QLTSRPLQLHIRPREYYSSTEERSSQPDQVVKDMPEMANLVYNMYMHMIQSTQQHRQQHI
LDPPRQVQKAEPAVKSDEERPETAAATEEEEEQTKTEERTDEEDHAKMPEHPGRDSDSGD
SDEDQEA
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaggactcgagactgataaagacctccgcgccttcagtggctcagattaacgcg
gaatatgtcactcagctttcaaacaaatactgggcgcctcatgtcaagaataaattacca
tttgattctcaggtcattgaagacatttatcagaatgagattcttaaatcaaaatttgcc
gtcagaaagattatgttgttggagttcagccagtatctggagagttacctgtgggtgaac
tacacacctgaagtctccaccaacagctacctgatgtccatctgctgcatcgtcaacgag
aagtttcgggaaaacgttcctgcctgggaggtgttcaagcgcgcgcccacacacttccct
cacttcttcaggtgtgtgatggagtcgtgtctgtcgggcgagcagctcggcctgtcgctg
aaggagcagacggtgcttctcctcttcctcgatcactgcttcaacagtctggaagtggac
ttgatccgtgagcaggtgcagaagctggtctctctgcccatgtggatgtgtctgctgccg
atgcgactgcagcaggaactgaagaaggtcccaaaactgcagaaattctggaacctcatt
aaaaagaactatgagaagatggaccctcaggacatggagcaagccaagaaggagcgcacc
ttcctcgctgcgctcataaagaagttcctgctggttctcatgtccatccctgcgtcaggc
tccgtctccatggagaaggttcactactgtgagagattcatcgagttcatgattgacctg
gaggctctcctcccgacccggcgctggttcaacacactcctggacgacgctcatctggtg
gtgaactgccagctgtcgcacctcacggaccgggagcaggagggacacctcttctgccag
ctgctggacatgctgaagttctacgctggctttgagatcagtgatcagactggaaacgcc
ctcacacagaaagagatgaccacactgcactacgacaggatcacctctctccagagagca
gcgtttgctcatttccctgagctcaatgattttgccctgtctaatgtggccgccgtggac
acgcgagagtccctcaccaaacacttcggccacctcagtcccaataccctccaccgggtg
tcggcatacctgtgtctcctgccggagcttccagagggagaagaaacgtcctatgagaga
gagttcctcctggaactgctggtgtcccaccacgagagacggatctcccagattgaacag
ctcaaccagatgcctctgtatcccaccgagaagatcatctgggacgagaacatcgttccc
acagagtactattcaggagaaggttgtttagctctgccgaagctgaacctgcagtttctg
accctgcatgactaccttctgagaaacttcaacctcttccgactggagtccacctatgaa
atccggcaggatatcgaggacgttgtactacggatgaagccatggcagtcggagtatgga
ggagtggtgtttggaggatgggctcgaatggctcagaccatactgtccttctctatcgtg
gaggtggccaagcccaacatcggggagaactggcctgcccgagtccgtgccgacgtcacc
ctcaacctcaacatccgagatcacatcaagaacgaatgggagggtctgcggaaacacgac
gtttgcttcctgatcacggtgcggcccaacctgccgtacggcacacgcttcgagcgccgg
cagccgttcgtggatcaggccgggctggtgtacgtgagaggctgtgaggtgcagggcatg
ctggacgataagggccgcgtcatcgaggagggtcctgatccgaagcccaaactaagagga
gacaccaggacgtttcgggtttggctcgacgcaaaccagtaccagcaggacatgaccaac
agcatccagaacggggcagaagacccctatgagaccttcaatatcatcatgagacgcaaa
cccaaagagaacaacttcaaggctgtgctcgagaccattcgaaacctcatgaacacagag
tgtgtggttcccgactggcttcacgacatcattctggggtatggagaccctggtagtgcc
cattactcaaagatgcccaatcagatctcctcgctggacttcaacgacaccttcctgtcc
atcgagcacctgaagtcctgtttccccaatcacacggtgaaggtgtcagaggaagatccc
gctcgacaggtcccgccttttagaatccgattccctgttcagaatgtgaaggctaagaag
cgtaaagccaatgaggaggagaaacggggtgaggaagatcagacgctggtggtggagccg
catgtgattcccaacaggggcccgtatccctacaaccagcccaagcgaaacaccatccag
tttacacccacccagatcgaagccattcgtgcagggatgcagccaggccttactatggtt
gttggtcctcccggcacaggaaaaacagacgtggctgttcagatcatctccaacctgtac
cacaacttccccgagcagagaacgcttatcgtcacacactccaatcaggctctgaaccag
ctgtttgagaagattatggcgttagatatcgatgaacgtcaccttctgcgtatgggccat
ggagaagaagaactagagactgagaaagatttcagcaggtatggacgagtgaactatgtg
ctgtcccggcgtctggagctcctgcgagaggtggcccgtctgcaggacagtctcggtgtg
cccggggacgtctcctacacatgtgagaccgctggacacttctacctctaccaggtaatc
tctcgttgggaggaatacatgagtaaagtgaagccaaagcccagccgagaggtgccggtg
gaggacgtggcgtcacacttccccttccacaagtacttctccaatgctcctcagccagtg
ttcaaaggccagtcgtaccaggaggacatggacatcgctgagggctgctaccgccacata
cgcaagatcttcacacagctagaggagttcagggcttttgagctgttgcgcagcgggctg
gaccgatccaaatacctgctggtgaaagaggccaagatcatcgccatgacctgcacacac
gccgcactcaaacgccacgacctggtggagctcggcttcaagtacgataacatcctgatg
gaggaggcagctcagatcctggagatcgagaccttcatccctctactgctacagaaccca
gaggacggctacagtcgactcaagcgctggattatgattggtgatcatcatcagttgcct
cctgtcatcaagaacatggcctttcagaaatattccaacatggagcagtcgcttttcacc
cggttcgtgcgtctgggtgtgcccaccgtagacctggacgcccagggcagagcgcgggcc
agtctgtgtaacctgtataactggcgctataagcagctggggaacctccctcatgttcag
ctccagcctgagttccagtcacccaaccccggattcacatacgacttccagctcgtgaac
gtggaggacttcaacggcgtgggggaatcagaacccaacccatacttttatcagaatctg
gcagaggccgagtattcagtggcgctgttcatgtacatgcgtttgctgggatatcctgct
gaacgcatcagcatactgaccacctacaacggccagaagcacctgatacgagacgtcatc
aaccagagatgtgccaacaactcattcttcgggcagcccaataaagtgacaacggtggac
aggtttcagggtcaacagaacgattacatcattctctcactggtccgcactaaagccgta
ggacatttgagagacgtgcggcgtctggtcgtggccatgtctcgtgcgagactcggcctc
tacatattcgctagggtgtctctgttccagaactgctatgagctgacgccagccttcagc
cagctgacctctcgacccctgcagctgcacatccggccccgggaatactacagctctacg
gaggagcgttcgtctcagcctgatcaggtggtcaaggatatgccagagatggctaacctg
gtttacaacatgtacatgcacatgattcagagcacgcagcagcacagacaacaacacatt
ctggatcctcctcgtcaggtgcagaaagcagagccggccgtgaagagcgatgaagagcgt
cctgagacggcggctgccactgaggaagaggaggagcagacgaagaccgaggagcgcacg
gatgaggaagatcacgcgaagatgcccgaacacccaggcagagacagcgacagcggggac
agtgacgaggaccaggaggcctag
DBGET
integrated database retrieval system
