Squalius cephalus (European chub): 307148101
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Entry
307148101 CDS
T11930
Symbol
pals1a
Name
(RefSeq) protein PALS1 isoform 1
KO
K06091
MAGUK p55 subfamily member 5
Organism
scep Squalius cephalus (European chub)
Pathway
scep04519
Cadherin signaling
scep04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
307148101 (pals1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
307148101 (pals1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
scep04990
]
307148101 (pals1a)
Domain-containing proteins not elsewhere classified [BR:
scep04990
]
PDZ domain-containing proteins
MAGUK family proteins
307148101 (pals1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Guanylate_kin
L27_N
PDZ
SH3_2
PDZ_6
L27
SH3_1
PDZ_2
MMR_HSR1
CSN4_RPN5_eIF3a
SpoOE-like
SH3_9
Motif
Other DBs
NCBI-GeneID:
307148101
NCBI-ProteinID:
XP_079709516
LinkDB
All DBs
Position
20:26230028..26260166
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AA seq
696 aa
AA seq
DB search
MQKAPILTLIPQTHSHHTSPHTRTAMMTTSHMNGYVTESDGGGGTDMHREMAVDCPSELG
ARTLPVRRSAQLERIRQQQEDRRRREEEGRNRQELDLNSSMRLKKLSQNPKVGIDNPTFE
QMEGPGGSIGGLQSLTAPPALLELEDLLMSLKQVQHSLNDSQSQEDVELVLQLVQKPDFQ
KAFNIHNAVAHNMNRPSPPYPLTDHAQSLAQEVEVMMHNSSQKDGLELSTLLTTPHVQAL
MMAHDSVAEQEMQLEPLVPSVNASETLTQWGGETVKIVRIEKAKDVPLGATVRNDMDSVV
ISRIVKGGAAERSGLLHEGDEVLEINGVEIRGKDVNEVFDILADMHGVLSFVLIPSAQIK
PPPIKETVTHVKAHFDYDPSDDPYVPCRELGLCFQKGDILHIISQDDPNWWQAYRDGDED
NQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKMHYNANKNDDFD
NEEILTYEEMALYHQPANRKRPIALIGPPNCGQNELRQRLLSSEPDRFAGAVPHTTRSRR
DIEVNGRDYHFVSRQVFEMDSAAGKFIESGEFEKNLYGTSTDSVRQVINTGKICLLCVHT
QSLKVLRSSDLKPYIIFIAPPSQERLRALLAKDNKNPKPEELRDIIEKAREMEQNYGHLF
DAAIVNTDLDKAYQELLRLINKLDTEPQWVPSSWLR
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaagcacccatcctaaccctcattcctcaaacacactcacaccacacttcacca
cacacacgcacagccatgatgaccacctcccacatgaacggatatgtgaccgagtcagac
ggcgggggaggcactgacatgcacagggagatggcggtggactgtcccagtgagctgggt
gctcgcacactgcccgtcagacgcagcgcccagctggaaaggattcgccagcagcaggag
gaccgcaggagacgagaggaagagggccgcaaccggcaggaacttgaccttaactcgtcc
atgcgcctcaagaaactttcccagaatcccaaggtgggcatcgataaccccacctttgag
caaatggaaggtcccggtggctccataggtggtctgcagagcctcaccgcaccaccagct
ttactagagctggaggacctgttgatgtccctcaaacaggtgcagcatagtttaaatgac
tctcagagtcaagaggacgtggagctggttctacagctggtccagaagcctgacttccag
aaagccttcaacattcacaacgccgtggcccacaatatgaaccggcccagccctccctac
cccctgacggatcacgcacaaagcctcgcacaagaggtcgaggtcatgatgcacaacagc
tcacagaaggatgggcttgagctgagcaccctgctcacgacacctcacgtgcaggcgctt
atgatggcccatgacagtgtggctgaacaagagatgcagctggaacctcttgttccttct
gtcaatgcaagtgagactctcacccagtggggcggggagactgtcaaaatcgtgcggatt
gagaaagctaaggacgtcccattgggagcgacagttagaaacgatatggacagcgtggtc
atcagccgcattgtaaaaggaggggcggcagaacgcagtggcctcctgcacgaaggagac
gaggtcctggagatcaacggtgtggaaatccgtgggaaagacgtcaacgaggtcttcgat
atcctggcggacatgcatggcgttctcagtttcgttctcatccccagcgcacagatcaaa
ccacctcccattaaagagactgtgacgcatgtgaaggcgcattttgactacgacccctca
gatgacccctacgtgccgtgccgagagctcggcctgtgctttcagaagggagacatcctc
cacataatcagccaagacgaccccaactggtggcaggcctacagagacggggacgaagac
aaccaacctcttgctggcctggtccctggcaaaagtttccagcagcagagagaggcaatg
aagcaaaccatagaggaggataaagagcctgagaaatcaggaaaactttggtgtgctaaa
aagaacaagaagaagcgaaagaagatgcattacaatgctaacaaaaatgatgattttgat
aatgaggagattctcacatatgaagagatggcactataccatcagccagccaatcgcaaa
cggcccatcgctctaatcggcccaccgaactgtgggcaaaatgagctcagacaaagactc
ctctccagcgagccggacaggtttgctggcgctgttcctcacactacacgaagccgccgt
gatattgaggtgaatggccgcgactaccactttgtgtcccgtcaggtttttgagatggac
tctgcagcagggaagttcatagaatctggagagtttgaaaagaacctctacggtaccagc
acagactcggtccgacaagtcatcaacaccggcaaaatctgcctactgtgtgtacacact
cagtctttaaaagtgttgcgcagctcggacctcaagccctacatcatcttcattgctcct
ccatcccaggagcgattgagagccctcctagctaaagacaacaaaaacccaaagcctgag
gagctgagagacattatcgagaaggcccgggagatggagcagaactacggccacctgttt
gatgccgccattgttaacactgacctggacaaggcctaccaggagctgctgcgtctcatc
aataaactagacactgaacctcagtgggtcccctcatcctggctgcgctga
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