Squalius cephalus (European chub): 307148352
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Entry
307148352 CDS
T11930
Symbol
xpo1b
Name
(RefSeq) exportin-1 isoform 1
KO
K14290
exportin-1
Organism
scep Squalius cephalus (European chub)
Pathway
scep03008
Ribosome biogenesis in eukaryotes
scep03013
Nucleocytoplasmic transport
scep03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
307148352 (xpo1b)
03008 Ribosome biogenesis in eukaryotes
307148352 (xpo1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
307148352 (xpo1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scep03019
]
307148352 (xpo1b)
03009 Ribosome biogenesis [BR:
scep03009
]
307148352 (xpo1b)
03016 Transfer RNA biogenesis [BR:
scep03016
]
307148352 (xpo1b)
03036 Chromosome and associated proteins [BR:
scep03036
]
307148352 (xpo1b)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
307148352 (xpo1b)
Ribosome biogenesis [BR:
scep03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
307148352 (xpo1b)
Pre-60S particles
307148352 (xpo1b)
Transfer RNA biogenesis [BR:
scep03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
307148352 (xpo1b)
Chromosome and associated proteins [BR:
scep03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
307148352 (xpo1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CRM1_C
Xpo1
CRM1_repeat_2
CRM1_repeat_3
CRM1_repeat
IBN_N
TPR_TNPO3_IPO13_2nd
BspA_v
Hydrolase_3
Motif
Other DBs
NCBI-GeneID:
307148352
NCBI-ProteinID:
XP_079709922
LinkDB
All DBs
Position
20:20075878..20096319
Genome browser
AA seq
1071 aa
AA seq
DB search
MPAIMTMLADHAARQLLDFNQKLDINLLDNVVNCLYHGVGPQQRMAQEVLTHLKEHPDAW
TRVDTILEFSQNMNTKYYALQILETVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDAANV
EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVSQYEEQFVSLFTLTMMQLKQMLPL
NTNIRLAYANGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNIRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSGSQHFDVPPRRQLYLPVLSKVRLLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHLIEKYMLL
PNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV
YKCLSENISAAIQTNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFVPPL
LDAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITGEIPQIFDAVFECTLNMINKDFEE
YPEHRTHFFYLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYTL
LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISA
TLNPTNPVNNQGFIQEYVANLLKSAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRDFLV
QIKEFAGEDTSDLFLEEREASLRQAQEEKHKLQMSVPGILNPHEIPEEMCD
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaattatgacaatgttagccgaccatgcagccagacagctgctggactttaac
cagaaactggatatcaacctgctggataatgtggtcaactgcctgtaccatggggtcggg
ccacagcaacgaatggcccaggaggtgctgactcatttgaaggagcacccagacgcgtgg
acacgagttgacaccattctagagttctctcagaatatgaacaccaaatactatgctctg
cagattctggaaacagttattaaaacaagatggaagattctgcccagaaaccaatgtgaa
ggcattaaaaagtatgttgtggggctcattatcaagacatcatcagatgcagccaatgtt
gagaaagaaaaggtgtacattggaaaactcaacatgatattagtacagatcctgaagcag
gagtggccaaaacactggcccacatttatcagtgacattgttggtgcgagccgcaccagt
gagagcctttgccagaacaacatgatcattctgaaactcctcagtgaagaggtgtttgac
ttctccagtggccagatgacacaagtgaaagccaaacacctgaaggacagcatgtgcaat
gagttctctcagatattccagttgtgccagtttgtgatggaaaattcccagaatgcccca
cttgtgcatgctaccttggagaccctgctaaggtttctcaactggattcccttgggctat
atctttgaaactaaactcatcagtactctggtgtacaagtttttaaacgtgccgatgttt
cgcaatgtgacactgaagtgcttgactgaaatagcaggagtcagtgtcagccagtacgaa
gagcagtttgtcagtctcttcactctgaccatgatgcagctcaaacagatgcttccactg
aacaccaacatccggctggcatatgcaaacggtaaagatgatgagcaaaactttattcag
aacctcagcctgttcctctgcaccttccttaaagagcacggacagctgatagaaaagaga
ttgaacatcagagagacgcttatggaggctctacattacatgttgctggtgtcagaggtg
gaggagaccgagatctttaagatctgtttggagtactggaaccaccttgcagctgagctg
tacagagagagtcctttctcaacgtccacttctcccctactctcaggcagccaacacttt
gatgtaccgccccgcagacagctctacctacctgtgctgtctaaggtgcgtttgttgatg
gtgagccgcatggccaagccagaggaagtactggtggtggagaacgatcagggcgaggtg
gttcgagaattcatgaaggatacagactccatcaacctctacaagaacatgagggagacg
cttgtctatcttacccatctggattatgccgacacagagcgtattatgacagaaaaactt
cataatcaggtgaatggtacagagtggtcctggaagaacctgaacacactatgctgggct
attggttccatcagtggagccatgcatgaagaggatgagaagcggtttctcgtcacagtc
ataaaggacctgctgggtctatgtgagcagaagagaggcaaggataacaaggccatcatt
gcctccaacatcatgtacattgttggccagtacccacggttcctacgtgcgcactggaaa
ttcctgaagactgttgtcaataaattgtttgagtttatgcatgaaacccatgatggagtt
caggacatggcgtgtgacacattcataaagatagctcagaagtgcaggaggcattttgtg
caggtgcaggtgggagaggtgatgcccttcattgatgagatcctcaacaacatcaacacc
atcatctgtgacctgcagccccagcaggtgcatacattttacgaggctgtcggctatatg
attggagcacagacagaccaggctgtacaggaacatctaatagagaagtacatgttgttg
cctaaccaggtgtgggacagcatcattcagcaggccaccaagaatgtggacatcctgaag
gacccggagacagtgaagcagttgggcagcatcctgaagaccaacgtcagagcgtgtaaa
gctgtgggacacccttttgtaattcagctgggtcgcatctacctggacatgctcaatgta
tacaagtgcctcagtgaaaacatctctgctgctatccagaccaacggtgagatggtgaca
aagcagcctctcatcaggagcatgcgcacggtgaagagagagactctgaagctgatctca
ggctgggtcagccgctccaatgacccacagatggtgggggagaactttgtccctccgctg
ttggatgctgtgctcattgattaccagcgcaatgtcccagcagcaagagaaccggaagtg
cttagtaccatggcaacaatcgtaaacaaactgggtggacacattactggagagatccct
cagatatttgatgcagtgtttgagtgcacattaaacatgatcaacaaagattttgaagaa
tacccagaacaccggacgcatttcttctatctgctgcaggcggtgaactctcactgtttc
ccagcattcctggctatcccaccagcccagtttaagcttgtgcttgactccattatatgg
gcttttaaacacactatgagaaacgtggcagacactggccttcagattctctacacgctg
ctgcagaacgtggcccaggaggaggcggcagctcagagcttctatcagacatacttctgt
gacatcctacaacacatcttctctgttgtcacggatacatcacatacagccggtttgacc
atgcatgcttctattttggcgtacatgtttaaccttgttgaggaaggaaaaatcagtgca
actctgaaccccacaaacccagtaaacaaccaaggatttatccaggagtatgtggccaac
ttgctcaaatcagctttcccccacttacaagatgcccaggtgaaagtattcgtgactggc
ctgttcagtttaaaccaagacatcccagcatttaaagaacacttgagggatttccttgta
cagatcaaggagttcgccggcgaggacacctctgatctgtttctggaggagagggaggct
tcgctgcgccaggcgcaggaggaaaaacacaagctgcagatgtctgtgcctggcatcctc
aaccctcacgaaataccagaggagatgtgcgattga
DBGET
integrated database retrieval system
