Squalius cephalus (European chub): 307148658
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Entry
307148658 CDS
T11930
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform 1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
scep Squalius cephalus (European chub)
Pathway
scep04140
Autophagy - animal
scep04142
Lysosome biogenesis
scep04145
Phagocytosis
scep04148
Efferocytosis
scep05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
307148658 (vps39)
04142 Lysosome biogenesis
307148658 (vps39)
04140 Autophagy - animal
307148658 (vps39)
04148 Efferocytosis
307148658 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
307148658 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scep04131
]
307148658 (vps39)
Membrane trafficking [BR:
scep04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
307148658 (vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
CYP38_PsbQ-like
Motif
Other DBs
NCBI-GeneID:
307148658
NCBI-ProteinID:
XP_079710460
LinkDB
All DBs
Position
20:complement(5886680..5914291)
Genome browser
AA seq
903 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWDDWLLVGTKPGHLLQYMIKKDAGAEFLHIFFCIDYL
LDLLLVSLIIYFITGTNRFEVTLEKSNKNFSKKIQQLFVVSQYKILVSLLENNIHVHDLL
TFQQITVVSKARGATLFACDLQKSSSGEAKLRMCVAVKRKIQLYYWKDREFLELQGDFAA
PDIPKSMAWCENSICVGFKRDYYLIRMDGRGSVKELFPTGKQLEPLVAPLADGKVAVGQD
DLTVVLNEDGVCTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTLEPRLLVQSVELQR
PRFITSAGSNVVYVASNHFVWRLVPVSIASQIRQLLQDKQFELALQLAKMKDDLDADKRQ
QIHHIQNLYAFNLFCQKRFDDSMQGFAKLGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPT
LSGAELEKAHLALIDYLTQKRSHLVKQLNDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTL
LKCYLHTNVALVSPLLRLENNHCHIEESEYVLKKAHKYSELIILYEKKGLHQKALQVLLD
QSTKANSPLKGHERTVQYLQRLGVENLGIIFEFSPWVLKICPEDGLKIFTEDLTEVETLP
RDKVLNFLKEGFKELAIPYLEHIIYMWEETRPEFHNVLIQLYLEKVQGLMKAYLNSLPEG
VSAVAAGKEAGELGEFRNKLLTFLEVSSSYEPERLISDFPFDGLLEERALLLGRMGKHEQ
ALFIYVHILKDTRMAEEYCHSHYDPAANGNKDVYLSLLRMYLSPPDVHFLGPIKMELCEP
QANLQAALNVLKLHHSKLNTTKAINLLPANTQIREIQVFLESVLEEKAGRKRFDQVLKSL
LQAEFLRVQEERIFHQQVKCVITDEKTCRVCKKKIGNSAFARYPNGVVVHYFCCKDRNMC
PAE
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcatttgaaccggttcctattctggagaaattaccgctccagattgactgt
ctggcggcctgggatgattggctccttgtcgggaccaaaccgggtcatctccttcagtac
atgatcaagaaagatgcaggtgcagagtttttgcatatattcttctgcattgattatttg
ttggatttacttttagtttcattgataatatatttcattacaggtacaaaccggtttgaa
gttacattagagaaatccaataagaacttctcaaagaagattcagcagctttttgtggtt
tcgcagtacaagattttggttagtcttttggaaaataacatccacgttcatgacttgctg
acgttccagcagataactgtggtgtccaaagccagaggagccacactgtttgcctgcgac
ctgcagaagtccagctcaggtgaggccaaactgcgcatgtgtgttgcagtgaagaggaag
attcagttgtattactggaaggacagagaattccttgaattacagggagattttgccgct
ccagacattcccaagtccatggcttggtgtgagaactcaatatgcgtgggtttcaaacga
gactactatctgatccggatggatggacgtggctcagtcaaggaactgttccccactggg
aaacagctggaaccgttggtggccccattggctgatgggaaggtggcagtgggtcaggat
gacctcacggttgttttgaacgaagatggcgtctgcactcagaaatgtgcccttaactgg
acggacattcctgttgcaatggagcaccagccgccctacatcattgcagtgttgccccgg
tatgtggagatccgcactctggaacccagactgctggtgcagagcgtagaactgcagaga
ccgcgcttcatcacctccgctggatcaaatgttgtctatgtcgctagcaatcattttgtc
tggcgcctggtgccggtctccatagccagccagatacggcagctgctacaggacaaacag
tttgaactggcgcttcagctagcgaaaatgaaggatgatttagatgcagacaagagacaa
cagatccatcacattcagaacctgtatgccttcaacctgttctgtcagaagcgctttgac
gactccatgcagggcttcgctaagttaggcaccgatcccactcatgtgattggactgtat
ccagacctccttccctccgactaccgcaaacagcttcactacccaaaccctctgcccacg
ctgtccggagccgagctggagaaagcccacctagccctcatagactacctgacacagaaa
cgcagtcatttggtgaagcagctgaatgactcggacccctctaccacctcgcctctcatg
gagggaaccccgaccatcaagagccgcaagaaactccttcagatcatcgataccaccctg
ctcaaatgttacctccataccaatgtagccttggtgtcacctctcctgcgcctggagaac
aaccactgtcacatagaggagagcgagtacgtgctgaagaaagctcataaatacagcgag
ctcatcatcctctatgagaagaaaggccttcaccagaaagctctgcaggttctgctggat
cagtccactaaagccaactctccactgaagggtcacgagaggactgtacagtatcttcag
aggctgggtgtggagaacctgggcatcatcttcgagttttcaccgtgggttctgaagatt
tgtcctgaggatggactgaagatcttcactgaggacctgacggaggtggagactctaccc
agggataaggtgttgaacttcctgaaggaggggttcaaggagctggccatcccatacctg
gagcacatcatttacatgtgggaagagacacggcccgagttccacaacgttctgatccag
ctgtacctggagaaggtgcaaggcctcatgaaagcgtacctcaactcactgcccgaaggt
gtttcagctgtagctgcgggaaaggaggcgggagagctgggagaattcaggaacaagctt
ctgacattcctggaagtttccagcagttatgagccagagagactcatcagtgatttccca
tttgatggtctgttggaggagagggctctgctcttgggtcgaatggggaaacatgagcag
gctctctttatttatgtacacattctgaaagacacacgtatggctgaagagtactgccac
agtcactacgatccagcagcaaacggcaataaagacgtgtatctgtccctcctgcgcatg
tatctgtctccgccggacgtgcacttcctcgggcccataaagatggagttatgtgagcca
caagccaacctccaggcggccctgaacgtccttaagctccaccacagcaaactgaacacc
accaaagccataaacctgctgccagccaacacacagatccgggagatccaggtgttcctg
gagagtgtgctggaggagaaggctgggaggaagcgcttcgaccaggtcctgaagagcctc
ctacaggccgagttcctgcgggtgcaggaggagcgtatctttcaccagcaggtgaagtgt
gtcatcacagatgagaagacctgcagagtgtgcaagaagaagatcggaaacagtgccttt
gccaggtatccaaacggtgtggtggttcactacttctgctgtaaagatcgcaacatgtgt
ccagcggagtag
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