Squalius cephalus (European chub): 307148825
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Entry
307148825 CDS
T11930
Symbol
lrit1a
Name
(RefSeq) leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1a
KO
K24491
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
scep04990
]
307148825 (lrit1a)
Domain-containing proteins not elsewhere classified [BR:
scep04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
307148825 (lrit1a)
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
LRR_1
Ig_3
ig
LRR_5
fn3
Ig_2
LRR_14
LRR_LRWD1
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
307148825
NCBI-ProteinID:
XP_079710813
LinkDB
All DBs
Position
21:complement(20169620..20173833)
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AA seq
643 aa
AA seq
DB search
MSLTVFLGLLLASGGFPLVRSTCPSQCSCFYHNLSDGSRARSVICNDPEISLVPATFPGD
TSKLRIEKTAIKRIPSEAFSYLSNLEFLWMSFNVLSSLNSDSFRGLDSLEELRLDGNSLT
SFPWESLMDMPSLRLLDIHNNQLSSVPSDAALYMKNLTYLDLSSNNLLTVPPEVLNTWLT
VKPVQGAESSKMILGLHDNPWLCDCRLYDLVQFQKSPSLSVAFIDTRLRCADPESLSGVL
FSDAELRRCQGPRVHTAVARVRSAVGNNVLLRCGTIGVPIPELAWRRADRKPLNGTVQLE
NSKEGIVWSILSVPAVSFRDTGKYICKATNYAGSAEAVISLIISDAPKAENPTVDPKTKV
KSKKANPIVKAAYQEKLIVTYASPTPNNKLQLRATVSYTGPYPGMESDNAANSRTNTQTA
SPDGFLETNLSNLAANTSSLQQDPDRVVRSVKVIGDTDYTVCLNWRAPTAKNTTAFSVLY
AVFGERDMRRINVSPGNNRILIEGLVPKTKYIACVCVKGLIPKKEQCVIFSTDAAATATG
TQKLINVVVITVACVIAVPLTVIVCCGALKRKIKKFLGKKSKDIQDSYVTFETLSPSTKA
KGLEGEYLTRLNAEESNRLLSARSSLDSESTAKIEGQPNEYFC
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttactgtctttttgggtctcctactggcatctggtggctttccacttgttcgg
agcacctgtccttcccaatgcagctgtttttatcataacctgagtgatggttccagagcc
aggagtgtgatttgcaacgatccagaaatttcactggtgcccgccacgttcccaggggac
acctcgaaacttcggattgaaaagactgcaatcaagaggatcccgagcgaggcttttagc
tacctctctaatttagaattcctttggatgtcttttaacgttttatcctctctcaactcg
gacagtttccgtggcttggacagtttagaggaactaaggctagatggaaattctctcact
tcgtttccgtgggaatccctcatggacatgcccagtctgaggctactcgatatacacaac
aaccagctgtcctcagtcccatctgatgccgctctctacatgaaaaacttaacctacctg
gatctatccagtaataatctgctgacagtgccacctgaggtcctcaacacttggttgacg
gtcaaacccgtccagggagcagaaagttcaaaaatgattctcggtctccatgacaaccca
tggttgtgtgattgtcgactatatgacctggtccagttccagaagtctcctagtctgtca
gtggccttcattgacacgaggctcaggtgcgctgatccagagagcctctctggagttctg
tttagcgatgccgagctcagacgctgccaggggcctcgggtccacaccgccgtagcccgt
gtgcggagcgcagtgggcaacaatgtgttgttgcgatgcggaaccattggggttcccatc
cctgagctggcctggagaagggcagatagaaagccactgaatgggacagttcagctggag
aattcaaaggagggaatcgtttggtctattttaagcgtgcctgccgtgtcctttcgtgac
acgggaaagtacatctgcaaagccacaaattatgcagggagtgcagaggccgtcatttct
ttgatcataagcgatgcacctaaagcagagaatccgactgtggatccaaaaaccaaagtg
aaatccaagaaggcaaaccctatagtcaaggcagcctatcaagaaaaactcatagtaacg
tacgcttccccaacacccaacaataagctacaactcagggccacagtgagctacacaggc
ccgtatccaggtatggagagcgacaatgctgctaacagtcggacaaatacccaaactgcc
agtcccgacgggttcctggagaccaatctgagcaacctggctgccaacacgtcctcactt
cagcaagaccctgacagggtcgtgcgctcggtcaaagtcattggcgatacggactacacc
gtgtgtctgaactggagggcaccgaccgccaagaacacaaccgcttttagcgtcctctac
gctgtgtttggggagagggatatgcgcagaattaacgtcagcccaggtaacaaccggatc
ctcatcgaaggactggttccaaaaaccaaatacatcgcctgtgtgtgcgtcaaggggctg
atccccaaaaaggagcagtgtgtaatcttctcaacagatgcagcggctaccgctactgga
acccaaaagctcattaatgtagtagtgatcacggtcgcctgcgtgatagccgtgcctctg
actgtgatcgtgtgctgcggggcgcttaagaggaaaatcaagaagtttctgggcaaaaag
tccaaagacattcaagactcatatgtgacgtttgagactctgtctcccagtaccaaggcc
aaaggcttggagggggaatatctcaccagactgaacgcagaggagtccaacagactgctg
tcggccaggtccagcctggactcggagtccaccgccaagattgagggacagcccaatgaa
tacttctgctga
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