Squalius cephalus (European chub): 307148971
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Entry
307148971 CDS
T11930
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform 1
KO
K08737
DNA mismatch repair protein MSH6
Organism
scep Squalius cephalus (European chub)
Pathway
scep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
307148971 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins
307148971 (msh6)
DNA repair and recombination proteins [BR:
scep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
307148971 (msh6)
SSDB
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GFIT
Other DBs
NCBI-GeneID:
307148971
NCBI-ProteinID:
XP_079711084
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Position
21:32876994..32891540
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AA seq
1371 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLAPKAKSKPSPAEADAVSRSNTSPKEQAQVNGRKTPAKAQVKAG
HAKLFGEKADTVKEREQSCMFSAGTLVWAKMEGHPWWPCMVVPQPLTGQQMRGRGRDQRL
HVHFFDEPPTRGWVNTKYIREYQGSDSADAKSGGVFFSGKPVIRKAMELADAAMKQSPEQ
RLKMSVCMDPSDEEEEEEDEEMDVEKSTLSDVEMSEEEAEEKVKPSRRSSRAAAETGQKS
KRRRIVVASDSDDSGEEFNPEQAKVSSDEEDDDEEEVVSSGAEEEESEQEPEPESPVKPV
KRKRPLQKPVKSQSKLDTPKRAPATLPSVTSNTKSRLSAFSAPDNFESQSTSANGTEGGS
TVWDHEKLDWLMDGKRKDAQRKRQSDENYDPTTLYVPDDFLNRTTPGMRRWWQLKSEMFD
TVLFYKVGKFYELYHMDAVIGVNELGLTFMKGAWAHSGFPEIGFGRFSDVLVQKGYKVAR
VEQTETPDMMEARCKKMARPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLSI
KEKSEEDSAGHCHIYGVCFIDTSVGRFHVGQFQDDRHCSRLRTLVAHYSPAQVIFEKGNP
SAETLKIFKAILSSTLQESLNAGSQFWDAQKTLKVLAEEDYFKESKASADDEKASVLPPT
LKAMTSECDALSLTPKTGYELALSALGGCMFYLKKCLVDQELFSMGNFEEYVPVDVEMEQ
AGGASCFFAQTHQKMVLDGVTLANLEILQNSSTGGPEGTLLERLDTCCTPFGKRLLKQWL
CAPLCNPSSIGDRLDALEDLMGAPSQMTEVTDLLKKLPDLERLLSKIHSMGTPVKGQDHP
DSRAVLYEEVVYSKRKIADFLAALEGFKVMKEIVSIMEPVAEGFRSKLMRQVVLLKTENE
DGLFPDLSPELKRWDKAFDHQKARTTGVITPKAGFDPEYDQALDGIKDCEKGLQEYLDRQ
KKRLGCKNLSYWGTGRNRYQLEVPDSVSERSVPEEYEVRSTKKGWKRYSTKEIERLFSEI
QSWEDKRDAALKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSMSRYSQSGDGPMARPE
MVLPGDGSQSHPFLDLRASRHPCVTKTFFGDDFIPNDIFIACPSGEEEEGQDNDKALAPC
VLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGEST
FFVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHY
HSLVEEHVQDPAVRLGHMACMVENECEDPSQETITFLYKFICGACPKSYGFNAARLANIP
EEVIQSGHKKAREFERSTVSLRIFKKLCSLAEDSTADREQFSALVQMIRSL
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcaaagttccctttttaatttcttcacaaagtcgcctcctctcgcgccgaag
gccaaatccaagccttctccagcggaggcagatgcagtgagcagatccaacacctcgcct
aaagaacaagcccaagtcaacggcaggaaaacacctgcaaaagctcaggttaaagctgga
cacgcgaaactgttcggggagaaagcagacactgtaaaggagagagagcagtcatgcatg
tttagtgctggcacgctggtatgggccaagatggaaggacatccctggtggccctgtatg
gttgttccccaacctctcaccggacagcagatgaggggccgtggccgagaccaaaggctt
cacgttcactttttcgatgaaccaccaacccgaggctgggttaacacaaaatacataaga
gagtaccaaggctctgatagcgcagatgccaaatccggaggcgtgttcttcagcggtaag
cctgtgatacgtaaagcaatggagctggcagatgctgcaatgaagcagagtcctgagcag
agactgaagatgtccgtgtgcatggatccctcagatgaagaagaggaggaggaggatgag
gagatggatgttgagaaatcaactctatcagatgtggaaatgtctgaggaagaggctgaa
gaaaaggtgaagcccagccgacgttcatctcgtgccgcggctgaaacgggtcagaagtcg
aagcgccggcgcattgtggtggcatctgacagcgatgactccggtgaagagttcaaccct
gagcaagcaaaagtaagcagtgacgaggaagacgatgacgaggaggaggtggtgagtagc
ggggctgaggaagaagaaagcgagcaggagcccgaaccagaaagccctgtgaaaccagtc
aagcgcaaacgtcctttacagaagcctgttaaatcacagagcaaactagataccccaaaa
cgagcacctgcgactttaccatccgtgacgtccaacaccaaatctcgactctctgctttc
tctgccccagacaacttcgaaagtcagagtaccagtgcaaacgggacggagggaggatct
actgtgtgggaccatgagaaactcgactggctgatggacggcaagagaaaggatgcgcag
cgtaaacgacaatctgatgaaaactacgaccccacgactctatacgttcccgatgatttc
cttaacaggacaacgcctggaatgcgccgttggtggcagctgaagtctgagatgttcgat
accgttctgttctacaaagtcgggaagttctacgagctctaccatatggacgcagtgatt
ggcgtcaacgaactcggcctcaccttcatgaagggggcttgggcccattcaggctttcca
gagattggcttcggacgcttctcagacgtactcgtgcaaaagggctacaaagtggctcgc
gtggaacagaccgagacccctgatatgatggaagcacgatgcaagaaaatggcgcgtccc
accaaatttgaccgtgtcgtcaagcgagaggtttgccgaatcatcacgcgagggactcag
acgtacagcgtgcttgatggcgccccttctgaaactcaaagtaaatatctgttgagcatt
aaagagaagagcgaggaggacagcgcaggccattgccacatctacggggtttgtttcatt
gacacctcggtgggacgcttccatgtcggtcaattccaggatgaccgccattgctcccgt
ttgcgtactctggttgcacactattctcctgcccaggttattttcgagaagggcaacccg
tcagccgagactttgaaaatctttaaggccatcttgtcttccactttacaagaaagcctc
aatgctggttcgcagttttgggatgcccagaagaccttaaaggtccttgctgaggaagac
tactttaaagaaagcaaagcgtcagctgatgacgaaaaggcatcagtgcttcctccaact
ctcaaagctatgacgtccgaatgtgacgctctaagtctcactccaaagacgggttatgaa
ctcgctctttctgcccttggcggctgcatgttttacctcaagaaatgtctagtggaccag
gagcttttttccatgggcaactttgaggagtatgttcctgtcgatgtggaaatggagcag
gctgggggagcatcttgtttttttgcccagacccatcaaaaaatggttttggatggagtg
acccttgctaaccttgagatccttcagaatagctcgaccggcggtcctgagggaacccta
cttgaacgattggacacgtgttgcactcccttcggcaaacggttgttgaagcaatggctc
tgcgcccctctttgtaatccatcctccattggtgatcgcttagatgctctggaggacctg
atgggtgctccatcccaaatgaccgaagtcaccgacctactaaagaagcttccggatctc
gaaaggctacttagcaagatccacagcatgggtactcctgtaaaaggacaagaccacccg
gactcccgagccgttctgtacgaggaggtcgtctacagcaaacgtaagatcgctgacttt
ctcgcagcacttgagggctttaaagtgatgaaagaaatcgtgtcgatcatggagcccgtc
gccgaaggcttccgatcgaaactaatgcgccaagtggtgctcctcaagacagaaaatgaa
gatgggcttttccccgacctttcgccagagctcaaacgttgggacaaagctttcgaccat
cagaaagctcgaaccacaggtgtcataactccaaaagctggctttgatccggagtacgac
caagccctagacgggattaaagactgtgagaaaggcctgcaggaatacctggaccgacag
aagaagagattgggatgcaagaatctatcatactggggaacgggaaggaaccgctaccag
ctggaagtccctgacagtgtttccgagaggagcgtgccagaggagtatgaggtgaggtcc
acgaagaagggctggaagcgttactctaccaaagagatcgagcggctgttttcagagata
cagagctgggaagacaagagagacgcagcgcttaaggactgcatgagaagactcttctac
aatttcgacaagaattacaaagactggcagacagccgttgagtgcatggctgtacttgat
gtgctgttgagcatgtcccggtacagtcagagcggcgacgggcccatggcgagaccggag
atggttcttccgggtgacgggtctcagtcgcaccccttcctggatctgagagcgtcccgt
cacccttgtgtcaccaagaccttcttcggggatgacttcattcccaatgacatcttcatc
gcttgccctagcggtgaagaagaagagggtcaagataatgataaagcacttgccccatgt
gtgttagtcactgggccaaacatgggaggcaagtccaccttaatgagacagtgtggtctg
gtggtgatcttggcccagctgggctgttacgttcctgctgagagtttgcgtctcactcct
gtggaccgagtgttcactcgtctcggcgcctctgatcggataatgtcaggtgaaagtacg
ttctttgtggagctcagcgagactgctagcatacttttgcacgccaccaaccactccctc
gtcttgctcgatgaactgggccgaggtacggccacgtatgacggcacggccatcgcgagc
gcagtggtgaaggagctgtccgagaagatctgctgtcggaccctgttctccactcattac
cactcactggtggaggagcacgtccaggaccccgccgtgagactcggacacatggcctgt
atggtggagaatgaatgcgaggaccccagtcaggagaccatcaccttcctgtacaagttc
atctgtggcgcgtgtcccaaaagttacggcttcaacgcagcccgcttggcaaacatcccg
gaggaagtcatccagtcgggccataagaaggcccgtgagtttgagaggagcaccgtgtct
ctcaggatattcaagaaactgtgctcattggctgaagactccacagctgaccgtgagcag
ttctcagcgctggttcagatgatccgcagcctgtga
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