Squalius cephalus (European chub): 307149039
Help
Entry
307149039 CDS
T11930
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a isoform 1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
scep Squalius cephalus (European chub)
Pathway
scep04137
Mitophagy - animal
scep04140
Autophagy - animal
scep04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
307149039 (hif1aa)
04137 Mitophagy - animal
307149039 (hif1aa)
04148 Efferocytosis
307149039 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scep03000
]
307149039 (hif1aa)
Transcription factors [BR:
scep03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
307149039 (hif1aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Hl_ALG44
PAS_2
Motif
Other DBs
NCBI-GeneID:
307149039
NCBI-ProteinID:
XP_079711188
LinkDB
All DBs
Position
21:complement(18827431..18848317)
Genome browser
AA seq
720 aa
AA seq
DB search
MDSVAPGKKRVSSERRKEKSRDAARCRRGKESEVFYELARELPFPHSITSNLDKASVMRL
ALSYLRLRKLLNTDVLDVETELDSQWNSSYLKALDGFLMVLSADGDIVYLSENVSKCLGL
PQIDLTGHTVFEFTHPCDHEELREMLAHRNGLCKKAKEFHTNRSFLLRMKCTLTSRGRTV
NVKSASWKVMRCSGHIHTADGVVKEKNACSTYLVLICESIPHPANIEAPLDSRTFLSRHT
LDMRFTYCDERITELLGFDPVDLLQHSVYEYYHALDSGHMTKTHHKLFVKGQVCTGQYRL
LAKAGGFVWAETQATVIYNSKNSQPQCVVCVNYILSGIEQPKQILSLQQTNSTKIKREQE
EHQEEFLGADVTMAELKEEGKQRDEKEKESVEEGLNDSLKGEPAALTVDPVLTLDITSTD
SAISVLTEIPLYNDVMLPCSSVLLPLSPLSPPCSSLNEDDASTAHLQPDDFPFPQSSASS
RSQVDLPVDLELSDQLKPDHVEKLFSMDMESKIPFNTQGVGLDLEMLAPYIPMDDDFQLR
TVSPAESMCSSPGSALELTPSSSTQTAPALPAAPTDLMSCDSVQQNTRTTEQDNCREIIE
DNDISSKCRTNPKLLKRKLETIPLSEAIRLGSVLQLVTDFPEKKARKSDASSSEGIRHAT
ILLLPSDVASRLLSRSSEGGAVTMPLPQLTRYDCEVNVPVTGRQHLLQGEELLCALDLVI
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtcgcacctggaaaaaaaagggtgagctcagagcgaaggaaggagaaatcc
cgagatgcagcacgttgtcggagaggaaaagaatcagaggtgttttatgaactggctaga
gaactacccttcccccacagcatcacctctaacctggataaagcatcagtcatgagactc
gcactcagttacctgcgcctgcgtaagctactgaacacagatgtactggatgtggagact
gaactggactctcagtggaacagttcatatctgaaagctctggatgggtttctcatggtt
ctttctgctgatggtgacatcgtgtacctgtcagagaatgtcagcaagtgtctaggccta
cctcagattgaccttactggacacactgtgtttgagtttactcatccatgtgatcatgag
gagctcagagaaatgctggcacacagaaatggtctgtgtaagaaagcaaaggagtttcac
acaaatagaagttttctattgaggatgaaatgtacactgaccagcagagggcgtactgtc
aatgtcaaatctgcctcctggaaggtgatgcggtgttcgggccatatccacacagcagat
ggtgtcgtgaaggaaaaaaatgcgtgttcaacgtacctggtgctcatctgtgagtctatt
ccccacccggcaaacatagaggctcctctggattctagaacgttcctcagccgccacact
ttagatatgcgcttcacctactgcgatgagaggatcacagagctgttgggttttgatcca
gtggatctgttgcagcattctgtgtatgaatactatcacgctctggattctggccacatg
accaaaacacaccacaagctgtttgtaaagggacaagtgtgtaccggacagtaccggctg
ctggctaaagcaggaggatttgtttgggcagagactcaggccactgtgatctataacagt
aaaaactcccagccacagtgtgtggtctgcgtcaactacatcctcagtggcattgaacag
cccaaacaaatcctgtcccttcagcaaaccaacagcacaaaaataaagcgagaacaggaa
gaacaccaggaggagttccttggggctgatgtgaccatggctgagttgaaagaggaggga
aaacagagggatgaaaaggaaaaggagtctgtggaagaggggttaaatgacagcctgaag
ggggagccagcggcactgactgtagaccctgtcctcacactggatatcactagcacagac
tctgcaatctctgtgctgacagaaattcctctctacaacgatgtgatgttgccctgttca
agtgtactgctacccctctcacccctctctcctccctgttcctccctaaatgaggatgat
gcctccacagcccatctacaacctgatgacttccccttcccacaatcttcggcttcttcc
agatcccaggttgatctccccgtggatttagaattaagtgaccagctaaaaccagatcac
gtggagaaactattttccatggatatggagtccaagataccctttaatacacagggagtt
ggtttggatctggagatgttagctccatacattcccatggatgatgatttccagctgcgg
actgtttctccagccgagtcgatgtgttccagcccaggttcagcgcttgagctgaccccc
tccagcagcacacaaactgcccctgctctcccagcagcccctacagacttgatgtcctgt
gacagcgttcagcagaacactagaaccacagagcaggacaactgcagagaaattattgaa
gacaatgatatttcttctaaatgtcggaccaacccgaagctgctcaagaggaaacttgag
accatacctctgtctgaagcaataagactgggctctgtgttgcagttggtgactgatttt
cccgagaaaaaggccagaaaatcagatgcttcatcatcagaagggattcgtcatgccacg
atactgttgctgccatctgatgttgcgagtagattgttgagcagatcgtcagagggtgga
gccgtaactatgcccctcccccagcttacccgttacgactgtgaggtaaatgtgcctgtg
actggacggcagcacctgttacagggggaggagctactgtgtgccttagacctagttatt
taa
DBGET
integrated database retrieval system
