Squalius cephalus (European chub): 307149715 Help Entry 307149715         CDS       T11930                                  Symbol actn1 Name (RefSeq) alpha-actinin-1 isoform 1   KO K05699   actinin alpha 1/4 Organism scep  Squalius cephalus (European chub) Pathway scep04510   Focal adhesion scep04517   IgSF CAM signaling scep04518   Integrin signaling scep04519   Cadherin signaling scep04520   Adherens junction scep04530   Tight junction scep04810   Regulation of actin cytoskeleton Brite KEGG Orthology (KO) [BR:scep00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     307149715 (actn1)    04518 Integrin signaling     307149715 (actn1)    04519 Cadherin signaling     307149715 (actn1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     307149715 (actn1)    04520 Adherens junction     307149715 (actn1)    04530 Tight junction     307149715 (actn1)   09142 Cell motility    04810 Regulation of actin cytoskeleton     307149715 (actn1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:scep04131]     307149715 (actn1)   09183 Protein families: signaling and cellular processes    04812 Cytoskeleton proteins [BR:scep04812]     307149715 (actn1)    04147 Exosome [BR:scep04147]     307149715 (actn1) Membrane trafficking [BR:scep04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     307149715 (actn1) Cytoskeleton proteins [BR:scep04812]  Eukaryotic cytoskeleton proteins   Actin filaments / Microfilaments    Actin-binding proteins     Cross-linking proteins      307149715 (actn1) Exosome [BR:scep04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    307149715 (actn1)   Exosomal proteins of colorectal cancer cells    307149715 (actn1)   Exosomal proteins of bladder cancer cells    307149715 (actn1) SSDB OrthologParalogGFIT Motif Pfam:  Spectrin CH EFhand_Ca_insen EF-hand_8 EF-hand_1 EF-hand_6 EF-hand_7 EF-hand_5 XisI U3_assoc_6 Motif Other DBs NCBI-GeneID:  307149715 NCBI-ProteinID:  XP_079712367 LinkDB All DBs Position 21:15750134..15785161 Genome browser AA seq 923 aa AA seqDB search MDHHHQQQHHHHQYDGGENDYMPQEDDWDRDMLLDPAWEKQQRKTFTAWCNSHLRKAGTQ IDNIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIG AEEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHI SWKDGLGFCALIHRHRPELIDYGKLRKDDPMTNLNTAFDVAEKYLDIPKMLDAEDIVGTA RPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIR RTIPWLENRVPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRP AFMPSEGKMVSDISNAWGGLEGAEKGYEEWLLNEIRRLERLDHLAEKFRQKAAIHEAWTD GKEEMLQDKDFETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELEYYDSPS VNARCQRICDQWDSLGVLTQKRSEALQRTEKLLETIDQLYLEFAKRAAPFNNWMEGAMED LQDTFIVHTIEEIQGLSTAHEQFKATLPEADKERQAILGIHNEIAKIVQTYHVNMAGTNP YTTINPQEINAKWDKVRQLVPQRDQALVEEHARQQNNERLRRQFANQANVIGPWIQTKME EIGRISIEMHGTLEDQLTHLRQYEKSIVNYKPKIDQLEGDHQLIQEALIFDNKHTNYTME HIRVGWEQLLTTIARTINEIENQILTRDAKGISQDQMNEFRASFNHFDRDHSGALGAEEF KACLISLGFDIGNDAQKRTGMMDAEDFRACLISMGYNMGEAEFSRIMSIVDPNRLGLITF QAFIDFMSRETADTDTADQVMASFKVLAGDKNYILADELRRELPPDQAEYCIARMTPYSG PDTVPGALDYMSFSTALYGESDL NT seq 2772 nt NT seq  +upstreamnt  +downstreamnt atggatcaccaccaccaacaacaacatcatcatcatcaatatgatggaggagagaacgac tatatgccccaggaagatgactgggatcgggatatgctgcttgaccccgcctgggagaaa cagcagcgaaagacgtttactgcttggtgcaattctcatttacggaaggcggggacacag atcgacaacattgaggaggattttagagatggactcaaactcatgctgctcctagaggtc atctcaggggaacgtttggccaaaccagaaagaggaaaaatgagagtccataagatctcc aatgtgaataaagctctggacttcatcgccagcaaaggagtcaaactggtttctattgga gcagaggagattgttgatggaaatgctaagatgactctagggatgatctggaccattatc ctccgcttcgccatccaggacatctcagtggaggagacctcagctaaagaaggcttgctg ctgtggtgccaaaggaaaacagctccctacaaaaatgtcaacattcagaatttccacatc agttggaaggatggattgggcttctgtgcactcattcacagacatcgtccagagctcatt gattacggtaaactgcgcaaggatgacccaatgactaatctgaacaccgcctttgatgtc gctgagaagtacctggacatccctaagatgctggatgcagaagatattgttggtacggct cgtcccgatgagaaggccatcatgacctacgtttctagcttctaccatgccttctctggg gcgcagaaggccgagacagcagccaatcggatctgcaaagtgctggctgtcaatcaggag aacgagcaactgatggaagactatgagaaactagccagtgatctattggagtggattcgc agaaccatcccgtggttggagaaccgtgttccggagaacaccatgcaggccatgcagcag aagttggaggatttccgggactaccgacgacttcacaaaccgcctaaagttcaggagaaa tgtcagctggagatcaacttcaacacactgcagaccaaactccgcctcagtaaccggcct gcgttcatgccctcagaggggaagatggtctcggatatctccaatgcttggggaggtctt gagggagcagagaagggttatgaagagtggctactgaatgagattcgcagactggagaga ctcgaccatcttgctgagaaatttcgccaaaaagccgccatccacgaagcctggactgac ggtaaggaggagatgttgcaggataaagactttgagacggcaaccctctcagagatcaaa gctctgctgaagaagcacgaggcgtttgagagtgacctcgcagctcatcaggacagagtg gaacagatcgctgccatcgcacaggagcttaatgagttggagtactacgactctcccagt gtaaacgcccgctgtcagcggatctgcgatcagtgggattcactgggagttttaactcag aaacgcagcgaggccttgcagaggacagagaaactgttggaaacgattgatcagctgtac ctggagttcgccaaaagggcggcaccctttaacaactggatggagggagccatggaggac ctgcaggacacttttatcgtccacactattgaggagatacagggactcagcacagcccat gagcagtttaaagccacactgcctgaggcagataaggaacgacaggccatcctgggcatc cataatgaaattgctaaaattgtgcagacataccacgtcaacatggctggcaccaatccc tacaccaccatcaaccctcaggagatcaatgccaaatgggataaggtgaggcagttagta ccccagagagatcaggccctggtcgaggaacacgctcgccagcagaataatgagagactg cgcagacagtttgctaatcaggcaaatgttattgggccctggatccagaccaagatggag gaaattggccgaatctctattgagatgcacggtaccctggaggatcagctgacccacctg cggcagtatgagaagagcatagtaaactacaaaccaaagattgaccagctagagggagac catcaactaatacaggaagcacttatatttgacaacaaacatactaattacacaatggag cacatccgtgtaggatgggagcagctcctcaccaccatcgctcgcaccattaacgagatc gagaaccagattctgacccgtgacgccaaaggcatcagccaggaccaaatgaatgagttc agagcctcgttcaaccacttcgaccgagaccactcgggcgcactgggcgctgaggagttc aaagcctgccttatcagtctgggcttcgatatcgggaacgacgcacagaagagaacaggc atgatggatgcagaagacttcagagcctgcctcatctccatgggttataatatgggagag gcggagttttcccgcatcatgagcattgtggatcctaacagactgggattgatcacattc caggccttcattgactttatgtctcgcgagacggccgacacggacaccgctgatcaggtc atggcatcgtttaaagtccttgctggagacaagaactatatcctggcggatgagctgagg cgcgagctcccccctgaccaggctgagtactgcatcgcccgcatgacgccttactccggc cccgacacggtcccgggagctctcgactacatgtccttctccaccgccctctatggggag agtgacctctga

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