Squalius cephalus (European chub): 307149869
Help
Entry
307149869 CDS
T11930
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform 1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
scep
Squalius cephalus (European chub)
Pathway
scep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307149869 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scep03041
]
307149869 (ddx42)
Enzymes [BR:
scep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
307149869 (ddx42)
Spliceosome [BR:
scep03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
307149869 (ddx42)
Complex B
307149869 (ddx42)
Complex C
U2 SnRNP specific factors
307149869 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
307149869
NCBI-ProteinID:
XP_079712587
LinkDB
All DBs
Position
1:39594279..39602171
Genome browser
AA seq
899 aa
AA seq
DB search
MMNWNKGGPSGKRGFGFGGFSLASGKKEEPPVTQKAHSAFGSSGPSGGYGKNQQLSSFYK
IGTKRANFDEENAYFEDDEEESSSADLPYIPAENSPTRKQFQSGGGGGGGGGSDSEDDPL
DAFMAEVEDQAAKDMKKLEEKEKEKKLAKGIRDDIEEEDDQEAYFRYMAENPTAGLTLEE
EEEEVDYDSDGNPIAPTTKKIILPLPPIDHSEIDYPPFEKNFYIEHEELSSLTGLGVVEL
RQKLNLKVSGAAPPKPSTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPISLSGRDMIG
IAKTGSGKTAAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHSECKRFGKVYGL
RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDM
GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIV
EVLQTGKEKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLNQEGYSLGLLHGDMDQS
ERNKVIADFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEK
GVAYTLLTTKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGG
GGLGYRERPGLGSESTERSSSGAALGNYEAYKPSTGAMGDRMSALKQAFHAQYKNHFVAA
SGVPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRPHLSYSPSSSSSFSSMLPPPALSS
GTKMSGFSSAGSLSSVSDSYSSSSSKEGSRSDRNADDRGRHGESHYRHGDRHSGGDRDRY
GERDRYSDRDRHGDSRNGEGSHRDREGRSERDGGERSGTHKDSFAVPDPPKRKKSRWDN
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactggaacaagggaggccccagtggcaagcgaggctttggatttgggggattc
tctcttgctagtgggaagaaagaggaacctcctgttacccagaaggcccactccgcattt
ggaagttcaggaccatcaggtggatatggcaagaatcagcagctttcgtctttttacaaa
ataggaacaaaacgagccaatttcgacgaggagaatgcttattttgaggatgatgaagag
gagtctagcagtgcagatctgccatatatacccgccgagaactctcccactagaaagcag
ttccaatctggaggtggaggaggaggaggaggaggctcagacagtgaggatgaccccctt
gatgcctttatggctgaggtggaggaccaagcagcaaaggacatgaagaaacttgaggaa
aaggaaaaagagaaaaagttggccaagggtatacgggatgacattgaagaagaagatgac
caagaagcatatttccgttacatggcggagaatccaacagctgggttgaccctagaggaa
gaggaggaagaagtggactatgacagcgatgggaatcccattgctcctactaccaaaaag
attatcttgcccttgccccccatagaccactcagagattgactatcctccctttgagaag
aacttttatattgagcatgaggaactcagcagtctgactgggcttggagtggtggaactg
agacagaaactcaacctgaaggtttcaggtgcagcccctcctaaaccatccaccagtttt
gcccactttggatttgatgagcagcttatgcaccagatccgtaaatccgagtacactcaa
cccacacccatccagtgccagggtgttcccatatctttgagtggcagagacatgattggc
attgccaaaaccggcagcggaaagactgcagcttttatttggccaatgctggtgcacatc
atggaccagaaggagctggagccgggagaaggacctattgctgtgattgtctgccccact
agagagctctgtcaacagatccattccgaatgcaagcgattcgggaaggtatatggcctt
cgctcagtggcagtgtacggaggtggcagcatgtgggaacaagccaaagctctacaggaa
ggagctgaaattgttgtctgcaccccaggtcgtctaatcgatcatgtgaagaagaaagct
acatctctgcaacgagtgacctacctggtatttgatgaagctgatcgcatgtttgatatg
ggctttgaatatcaagtgagatccattgccagccatgtcagacctgatcgacagactctg
ttattcagtgcaacatttcggaagaaaatcgaaaagctggcacgagatattttggtcgac
cccatccgtgttgtgcagggagatataggagaggctaatgaagatgtcactcagatagtg
gaggtgctgcagactgggaaggagaagtggggttggctaacccgcaggctggtggagttc
acctccgctggctcagtgctggtctttgtcactaaaaaggctaactgcgaggagctggct
acaaatttaaatcaggaaggttatagcctggggctgctccatggagacatggatcagagt
gagaggaacaaagtcattgctgactttaagaagaagaatctgcccatattggtagctact
gatgttgctgctcgtgggttggatattccatctatccgtacggttgtgaactacgatgta
gcacgagacattgacacacacacacatcgaattggtagaacaggtcgtgcaggagagaaa
ggtgtagcttacactctgctcaccactaaagacacttcattcgctggtgacctggttcgc
aatttagagggagccaatcagagtgtttcaaaggagctgatggacctggcaatgcagaat
ccctggttccggaaatcccgctttaagggagggaaagggaagaagctaaatattggaggt
ggtggcctgggttacagagagagacctggacttggatctgaatccactgagcgcagtagt
agtggtgctgctcttggtaactatgaggcctacaaaccctccactggagccatgggagac
cgtatgtctgccctgaagcaagcatttcacgctcagtataaaaaccactttgtggcggca
tctggtgttcctcctaaacttactacaaagtccagcagctcctctgggtggaccagtgca
ggaagtctaagttctttgccttcaggagcacctgaggggcctgacagaccccacctgtcc
tactctccatcgtcgtcctcctcattttcctccatgctgccgccccctgccctcagctca
ggcaccaaaatgagcggcttcagtagcgctggctccctgagctcggtttcagactcttac
tctagctcttcttcaaaagaggggtcccgtagtgataggaatgctgacgacaggggtcgt
catggagaaagtcattatcgtcatggtgacaggcatagtgggggagaccgtgatcgctat
ggggaaagggaccgctatagtgacagagatcgtcatggcgatagccgaaacggtgaaggg
agccatagggacagagagggacggtcagaacgagatgggggtgagaggtcagggactcat
aaagacagctttgcagttcctgatccccctaaacgcaagaaaagcagatgggacaattaa
DBGET
integrated database retrieval system
