Squalius cephalus (European chub): 307150211
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Entry
307150211 CDS
T11930
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a isoform 1
KO
K06757
neurofascin
Organism
scep Squalius cephalus (European chub)
Pathway
scep04514
Cell adhesion molecule (CAM) interaction
scep04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
307150211 (nfasca)
04517 IgSF CAM signaling
307150211 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scep04515
]
307150211 (nfasca)
Cell adhesion molecules [BR:
scep04515
]
Immunoglobulin superfamily
L1 family
307150211 (nfasca)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
Bravo_FIGEY
V-set
Ig_VEGFR-1-like_5th
Ig_5
V-set_CD47
C2-set_2
Ig_C17orf99
Fn3_PBP1
FN3_DSCAM-DSCAML_C
Ig_PDGFR_d4
BiPBP_C
Fn3_ROS1
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
307150211
NCBI-ProteinID:
XP_079713250
LinkDB
All DBs
Position
22:21319161..21408706
Genome browser
AA seq
1383 aa
AA seq
DB search
MWTQGRWAALAVLSIILLLSKEAAPIEVPLDPKIQQELKQPPTIVKQSLKDYIVDPRDNI
IIECEAKGNPVPTFLWRRNGKFFNVGKDPRVTMRSRSGTLEFRSSGKPEDYEGEYQCFAS
NDFGTAISNKILLRVSKSPLWPKEVLDPVTVREGVSLVLPCNPPPGLPPPETFWMDSSIM
PIPQDKRVSMGLNGDLFFSNVLAKDANTDYSCNARFEFTHTIQQKNPYTLKVQAKERYND
TFLNSTDLYGVRNVPEIQPAFLSPKGLSSSKIVLRGEQLLLECIAAGVPTPSINWFKRGG
DLPAKKVKLENFNKTLRILNVSEEDSGGYTCMASNKIGSIRHSVEVQVKAAPYWLDKPTN
LVLAPDENGRLVCRANGNPKPTIQWLVNGEPIESSLPNPNQQVLGDTIMFHSVQIGSSAV
YQCNASNEHGYLLANAFVSILDMAPRMLGPKNQLIKVIENNRTFLDCPFFGSPFPLLRWF
KNGLGSGLDGGQYKLYPNGTLEINQARPEDQGTYTCVASNILGKMENQVRLEVKEPTRIV
RAPEHVTEPRGSTVRFDCRVKRDSSLPVTVTWLKDDKPLSFSWIPGRLRKDEESLTIQNV
NPEDGGTYTCTAKTEIDEDSASARLTVIEDDISSASNRSASAGRPDPPQDLELSDPSARS
VRLTWVPGNENNSPVTHFLVQFEEDRWEPGKWQNLSIYDGNLNSVNLQLSPFVNYQFRVI
AINAVGQSQPSHPSARYQTSGAPPDVIPGGLKGWGNKKNNMEITWEALQNTERNGPNLRY
VVSWRRKDTEQEWNNITTTKAKHIVHNTDTYVPYEIKIQAINDFGHSPESNVVIGYSGED
KPSAAPTELRVSKINSTKVNVHWVPVDPSTVNGEFKEYKLYYWREASLIKGLKVNKTKLH
KGFFTTAEHPSGILTELFPYSKYKIYMVVANREHEGPQSNIVEFQTKEGEPGAPKYFRIQ
RHTDVVHLKWDKPLEPNGILIGYTLQYHTVNGTQTGERKVQSFPPNVTEYIMNLPHRLTR
FKFYLAARTQVGAGEVYAVESPHFANEGTPDTDSTVVAVNFTDALMFETPPPPPPLSTDP
IPAILTPEPATPAPTTAAPPKPTTTSTTTTTTTTTTTTTTTTTTTTTTTTASTTLLPVRP
MSPKTVDWKMLAPNVKIWNLTVDANNDYANVSWKHNFSVDSSKFVLEYTLDSNGSMKSIQ
VNQQPFIKLAGLVAGAKYRLRVYSHEHHSISSDFVTFETGRAYKEQEDIATQGWFIGLMC
AVALLVLILLIVCFIKRSRGGKYPVREKKDLPLDPVDHKDQDGSFDYHSDEDNKPLQGSQ
TSLDGNVKESDDSLVDYGEGGDGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIY
SLA
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgtggacgcaggggcggtgggcggcactggcggtgttgtcaataatcttgctgctgtca
aaggaagcggctccaattgaagtcccactggacccaaagatccagcaagagctgaaacag
ccccccaccattgtgaagcagtcactaaaggactacattgtggaccccagagataacatc
atcattgaatgcgaggccaaggggaaccccgtgccaacgtttctgtggcggcggaatggg
aagttctttaacgtggggaaggacccgcgggtgaccatgcggagtcgttccggaactctg
gagttcaggagcagtgggaaaccggaagattatgaaggagagtaccagtgctttgcctcc
aacgactttggcacagcaatttccaacaaaatcctgcttcgagtgtcaaagtctccgctg
tggcctaaagaggttctggatccggtaactgtgcgtgagggggtatcactcgtcctgccc
tgcaaccctccccctggtctcccccctcctgaaaccttctggatggacagctccattatg
cctataccacaggacaagagggtgtcaatgggtctgaatggtgacttgttcttctccaat
gttctggctaaagatgccaacactgactacagctgcaacgctcgcttcgagttcacacac
accattcagcagaagaacccctacacccttaaagtgcaagcaaaggaacgttataatgac
acctttctcaactccactgatctgtatggtgtgcgaaatgtaccagaaatccagcctgcc
tttctgtctccaaagggcttgtccagctccaagatcgtgctccgaggggaacagcttctt
ctggagtgtatagcagctggagtcccaactccttccattaattggttcaaaagaggagga
gacttgccagcaaaaaaagtcaagcttgagaacttcaataaaactttacgcatcctcaat
gtgtccgaagaagactctggcggctacacctgcatggccagcaacaagatcggcagcatt
cgccattctgttgaagtccaggtcaaagctgcaccctattggctagataagcccaccaat
ctggtgcttgcccctgatgagaatggacggttagtgtgtcgtgccaatgggaaccctaaa
cccaccatccaatggctggtgaatggggaacctattgaaagttcactaccaaacccaaac
cagcaagttcttggggataccatcatgttccattcggtccagatcggaagcagcgcagtg
taccagtgtaacgcctccaatgagcacggttacctactggccaatgcttttgtcagcatc
ctggacatggctccgcgaatgctaggcccaaagaatcagctgatcaaagtcattgaaaac
aacagaaccttccttgactgccctttctttggttcaccgttccctttactgcgctggttt
aagaatggcctaggcagtggtctggatggtggtcagtacaagctgtacccaaacggtact
ttggagatcaatcaagcccggccagaagaccaaggcacctacacctgtgtcgccagcaac
atcctgggcaagatggagaatcaggtgcgcctggaggttaaagagcccacaaggatagtg
cgggcacccgagcacgtcacagaacccagagggagcacggttcgctttgactgtcgagtt
aaacgtgattcttcccttcctgtcacggtcacatggctgaaagatgacaaacctctaagc
ttcagttggattcctggccggttgagaaaggatgaagagtccttgactattcagaatgtc
aatccagaagatggaggaacctacacatgcactgccaaaactgagatagatgaggactct
gcctcagctcgccttacagttatagaggatgacatctcttctgcctcaaatcgtagtgcc
tctgcaggtcgacctgacccccctcaggatctcgagctctcggacccttcagcacgtagt
gtcagactcacctgggtgcctgggaatgaaaacaacagtcctgttacacatttcctcgtt
cagtttgaagaggacaggtgggagccgggcaagtggcagaacctgtctatatatgatggc
aacctaaactcagtaaacctgcagctgtcaccctttgtcaactaccagttcagagtgatt
gcaatcaatgctgtgggccagagtcaacccagccacccttctgcacgctatcagaccagc
ggagcccctcctgatgttatccctggtggtcttaaaggctggggaaacaagaagaacaac
atggagatcacatgggaggcccttcagaacacagaaaggaatgggccaaacctgcgatat
gtggtctcctggagaaggaaagacacagagcaagagtggaataacataactacaaccaaa
gcaaagcacattgtccataatacagacacctatgtcccatacgagatcaaaatacaggcc
attaatgactttggacacagcccagagtcaaacgtagtcatcggttactctggggaagac
aaaccgtccgctgcaccaacagaactcagggtgtcgaagatcaacagcaccaaagttaat
gttcactgggtgcctgtggaccccagcactgtgaacggagagtttaaagagtacaagttg
tactactggcgggaggccagcctcatcaaaggcttgaaagtaaataagacaaagttgcat
aaaggtttcttcaccactgccgaacatccctctggcatcctgacagagctttttccatac
agcaaatataagatatacatggtggtggctaatagagagcatgagggaccacaaagtaac
attgtggagtttcaaaccaaggagggagagccaggagctccaaagtactttaggattcag
aggcacacagacgtggttcacctgaagtgggacaagccactggagccgaacggtatcctg
attggatacacactccaataccacacagtgaacgggacgcagacgggagagaggaaggtc
cagagttttccacccaatgtaacggagtacatcatgaatctgcctcaccgcttaacacgg
ttcaagttctacctagcagctcgcacacaggtcggcgcaggagaggtgtacgccgtggag
tcgccacatttcgcgaatgaaggcaccccagatactgactctacagttgtagccgttaac
tttacagatgccttgatgttcgaaactcctcctcctccccctcccctctccactgatcca
atcccagcaatacttaccccagaaccagccacaccagcccctacaactgctgctccgccc
aaacctactaccacttccaccactactaccactacaactactactactactacaaccaca
actactacaactactaccaccactacaacagcttccaccacacttcttcctgttcggccc
atgtctcctaaaacagtggattggaaaatgctggccccgaatgtaaagatctggaatctg
accgtggatgctaacaatgactatgctaacgtcagctggaagcacaacttctccgttgac
agcagcaagtttgtgctagagtacacattggacagtaatgggtcgatgaaaagcatacaa
gtaaaccagcagcctttcattaagctggctgggctggtggccggggccaagtatcggttg
cgggtgtattcccatgagcatcactccatcagcagcgactttgtcacgttcgagacaggc
agagcctacaaggagcaggaagacatcgctactcagggctggttcattgggctgatgtgt
gccgtcgctttattggttctcattctgctcattgtttgtttcatcaagaggagtcgtgga
ggaaaatacccagtgagagagaagaaagacctccccttagatcctgttgaccataaagac
caagatggatcatttgactatcacagcgacgaagacaacaagccattgcagggcagccag
acatccctggacgggaacgtaaaagagagcgacgacagtcttgtggactatggtgaagga
ggggacggccagttcaacgaggacggctcattcattggccagtacacagttaagaaggac
aaagaggagactgaaggaaacgagagctcagaagccacgtcacccgttaatgccatctac
tctctggcatag
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