Squalius cephalus (European chub): 307150502
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Entry
307150502 CDS
T11930
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform 1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
scep Squalius cephalus (European chub)
Pathway
scep04517
IgSF CAM signaling
scep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
307150502 (sptbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
307150502 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
scep04812
]
307150502 (sptbn1)
Cytoskeleton proteins [BR:
scep04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
307150502 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
307150502 (sptbn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
SOS1_NGEF_PH
SCAR_helical
Motif
Other DBs
NCBI-GeneID:
307150502
NCBI-ProteinID:
XP_079713916
LinkDB
All DBs
Position
22:31877968..31998784
Genome browser
AA seq
2348 aa
AA seq
DB search
MTTVAAEFEHMDIQQQYPDSVNNRWEDEWDNENSSARLFERSRIKALADEREAVQKKTFT
KWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQ
FLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKRSAKDALLL
WCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLA
EQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETE
KMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGN
LEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRTELIRQEKLE
QLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAV
VSVARELEAENYHDIKRIAARKDNVLRLWEYLLELLKARRQRLEMNLGLQRVFQEMLYIM
DWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADISIQADRVKAVNANAQRFAVDEEGY
KPCDPQVIRDRVSHMEFCYQELTQLASERRARLEESRRLWKFFWEMAEEEGWIREKEQIL
SSDDCGKDLTGAVRLLSQHRALEDEMSGRSGHLQNTVREGQTMADAGHFGEAKIRERIAD
VQAQWAALEQLASVRKTRLEEACSLHQFQVDADDVDAWTLDALRIVSTSDVGHDEFSTQA
LVRKHKDASTEVASYRPVIDALHEQAQSLPPEQAKAENVSERLAGIEERYKEVSELTRLR
KQALQDALALYKMFSEADACELWIDEKEQWLNSMEIPEKLEDLEVIQHRFESLEPEMNNQ
ASRVAVVNQIARQLIHNGHPSEKDIKAQQDKLNTRWSQFRDLVDQKKESLNSALGVQNYH
LDCNETKSWIREKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEAKLGDLRGEADR
LAGEHPDQAKAITGRLAEITSVWEEMKETLRTREESLGEASKLQQFLRELDDFQSWLSRT
QTAIASEDMPNTLAEAEKLLAQHEGIKNEINNYEEDYQKMRDMGEMVTQGQTDAQYMFLR
QRLQALDTGWNELHKMWENRQNLLSQSHAYQIFLRDTKQAEAFLNNQEYVLAHTEMPTTL
EGAEAAIKKQEDFMTTMDANEDKINSVVEAGRRLASDGNINADRIQERATSIDDRHKKNR
EAAVELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFMA
ELQSNKEWLDKIEKDGKQLVSEKPETDAVVKEKLAALQKMWTELETTTQTKAQCLFDANK
AELFTQSCADLDKWLVGLEGEVQSDDYGKDLTSVSILLKKQQILENQVEVRQREVEELQS
QAHVLRQEGKDTDEVDGRRVEVEQKFKELLDPLLKRKNFLMASREIHQFNRDVEDEILWV
EERMPIATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRCDDIFERSQSILKADSPNVES
IRSRLSDLQELWSLIIQETEKRHSRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAK
DEQSSVAMLKKHQILEQAVEDYAETVHQLSKTSRGLVAANHPESERIGMRQSQVDKLYAG
LKDLSEERRGKLEERFRLFTLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFRE
FARDTGNIGQERVDGVNRMADELINAGHADAATVAEWKDGLNEAWADLLELIDTRTQILA
ASYELHKFYHDAKEILGRILDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQ
LQEDAVRLQSAYAGDKADDIQRREGEVLEAWRSLLEACEGRRARLLDTGDKFRFFSLVRD
LMLWMEDVIRLIETQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLARKH
YASEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSS
REMGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERKRKPPT
PEPVQDTDTQQREGEQIAQNGLPSDQDSPRDGVDGEMNGVAERSSKEPSPIPSPSAERRG
KGSQSSTLPAKAQENPAAQLEAFLHRKHEWEGHNKKASSRSWHNVYCVINNHEMGFYKDN
KSASQGIPYHNEIPISLKDAVCEVAVDYKKKKHVFKLRVTDGNEYLFQAKDDEEMNTWIQ
AIQNAGSVSSSSEKSEITPSNQSTPASSRAHTLPATVTMTTESSPGKREKDKEKDKEKRF
SLFSKKKQ
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagtagccgcagaattcgagcacatggacatccagcaacaatacccggacagc
gtgaacaaccgctgggaggacgaatgggacaacgagaacagctcggcccggctattcgag
cgctcgcgcatcaaggctctagcggatgagcgagaggccgtgcagaagaagaccttcacc
aaatgggtgaactcacacctggcgcgcgtgtcctgccggatcacggacctgtacatggat
ctccgggatggacggatgctcatcaaactgctggaggttctgtccggagagagactgccc
aagccgacgaagggccgcatgcggatccactgcctggagaacgtggataaagccctgcag
ttcctcaaggagcagcgcgtgcacctggagaacatggggtcacatgacatcgtcgacggg
aaccaccgactcacgctcggactcatctggaccatcatcctccgcttccagatccaagac
atcagcgtggagacggaagataataaagagaaacgctcggccaaggacgcgctgcttctg
tggtgtcagatgaagaccgcaggatatcccaacgtcaacatccacaacttcaccaccagc
tggcgcgatggcatggcgttcaatgccctcattcacaaacacagaccagacctgattgat
ttcgacaaactgaagaagtccaacgctcactacaacctgcagaacgccttcaacctggcc
gagcaacacctggggctcaccaaactcctggacccagaagatatcagcgtagaccatccc
gatgagaagtccgtcatcacttatgtcgtcacatactaccattatttctccaagatgaag
gccttgaaggtggagggcaaacgtatcggaaaggtgctcgacaacgccatcgagactgag
aagatgatcgagaaatatgagtctctggcttcggatctgctggagtggattgaacaaacc
atcatcatcctcaacaatcgaaagtttgcaaactcactggttggagtccagcagcagctt
caggccttcaacacctacaggaccgtggagaaaccacccaaattcactgagaagggaaac
ctggaggtgcttctgtttactatccagagcaagatgagggctaataaccagaaggtgtac
atgccacgcgagggcaaactcatctcagacatcaacaaggcgtgggagcgtctggaaaag
gccgagcacgagcgggagttagcgttgaggaccgaactgatccgacaggagaagctggag
caactcgccagacgcttcgaccgcaaggccgccatgagggagacctggctgagcgagaac
cagcgcctcgtttcacaggacaatttcggattcgacctccaggcggtcgaggcagcgact
aaaaagcacgaagcgatcgagactgacatcgcggcgtacgaggagcgcgttcaggcggtg
gtgtccgtggccagagagctggaggccgagaactaccacgacatcaagcgcatcgcggcg
cgcaaagataacgtcctgcgactgtgggagtatctcctggagctgctcaaagctcgcaga
cagaggctggagatgaacctcggcctgcagcgcgtcttccaggagatgctctacatcatg
gactggatggatgaaatgaagatgctgctgctttctcaggattatgggaagcacttgctg
ggggtggaagatcttctccagaaacacgcgctggtggaggccgacatcagcattcaggcc
gaccgcgtcaaagccgtcaacgccaacgctcagaggttcgccgtggatgaggagggctac
aaaccctgtgaccctcaggtcatccgagaccgcgtgtcccacatggagttctgctaccag
gagctgacccagttagcatccgagcgtcgcgcacgccttgaagaatcccggcgtttgtgg
aagttcttctgggaaatggccgaagaagagggttggattcgggagaaagagcagatcctt
tcctcagacgactgcgggaaggatttaaccggcgccgtccgcctattgagtcaacaccgt
gctctcgaagacgagatgagcgggcgctcgggacacctccagaacacggtccgcgagggt
caaacgatggccgacgccgggcacttcggcgaagctaagatccgtgagcgtatcgcggat
gttcaggcgcaatgggccgctctggaacagctagcgtcggtgaggaaaacccgtttggaa
gaagcttgtagccttcatcagttccaggtcgacgctgacgacgtggacgcctggacttta
gacgcgcttcggattgtctccacctcagatgtcggccatgatgagttttcaactcaagct
ttggttaggaaacacaaagacgcgtcgaccgaggttgctagttatcgtccggtgatcgac
gctctccacgaacaggctcagtctcttccccccgagcaggcgaaggcggagaacgttagc
gagaggctagcgggcatcgaggaacgctataaagaggtttcggagttgacccggctgagg
aaacaggccttgcaagacgccctggcgctctataagatgtttagcgaggcggatgcgtgt
gaactctggatcgatgagaaggagcagtggctcaacagcatggagatcccagagaaactg
gaggaccttgaggtcattcagcacaggtttgagagtctggagcctgaaatgaataaccag
gcctcacgtgtggcggtggtcaatcagatcgccaggcagctgatacacaacggacacccg
agcgagaaagacatcaaagcccaacaagacaaactcaacaccaggtggagtcagttccga
gacctggtggaccagaagaaagagtccctgaactccgccttgggcgtgcagaactaccac
ctcgactgcaacgagaccaaatcctggatccgtgagaagacaaaagtcatcgagtccact
caggagctgggaaacgacctgacaggcgtaatggccctgcagcgcaaactcaccggcatg
gagcgcgacctggccgccatcgaagccaaactgggagatctccgcggcgaagcggatcgt
ttggccggagaacatcccgaccaggccaaagccatcacaggacgactagcggaaatcacc
tcggtttgggaagagatgaaagaaactcttcgaacccgagaggaatctcttggggaagcc
agtaaactccagcagttccttcgagaactggacgatttccagtcttggctttcccgaacg
caaacggccatcgcgtccgaagacatgccgaacacgctcgccgaggcggagaagcttcta
gcccagcacgaaggcatcaagaatgagattaacaactacgaagaggactatcagaagatg
cgggacatgggtgagatggtgacgcagggccagacggacgcccagtacatgttcctgagg
cagaggctccaggctctggacaccggctggaacgagcttcacaagatgtgggagaaccgg
cagaaccttctgtcccagtctcacgcctaccagatcttcctcagagacaccaaacaagcc
gaggccttcctcaacaaccaggagtatgttctggcccatacggagatgcccaccaccctg
gaaggggcggaggctgccataaagaagcaggaggacttcatgaccacgatggacgccaat
gaagacaagatcaacagcgtggtggaggccggcaggagactggccagcgatgggaacatc
aatgccgaccgcatccaggagagagcgacctccatcgacgaccggcataagaagaaccgt
gaggcggctgtggagcttctcatgaggttgaaggacaacagagacttgcagaagttcctg
caggactgccaggagctgtccctgtggatcaatgagaagatgttgacggcacaggacatg
tcctacgatgaagctcgaaacctgcacagcaaatggctcaaacaccaggccttcatggcc
gaactgcagtccaacaaagagtggctggataaaatcgagaaggacgggaagcagctggtc
tcggagaagccggagacagacgccgtcgtgaaggagaagctggcggcgctgcagaagatg
tggaccgaactggaaaccacgactcagactaaagcccagtgtctgtttgacgccaacaag
gccgagctcttcacgcagagctgtgctgatctggacaaatggctggtgggcctggagggt
gaggtccagtctgacgattacggcaaagacctgaccagcgtcagcatccttctcaagaaa
caacagatcttggagaaccaggtggaggtgcgtcagagagaggtggaggagcttcagtct
caagctcatgttctgagacaggaaggcaaagacacggacgaggtggatggacgtcgggtc
gaggtggagcagaagtttaaggagctgctggatccgctgttgaagaggaaaaacttcctc
atggcgtcgcgcgagatccaccagttcaaccgcgacgtggaggacgagattctttgggtt
gaggagaggatgcctatcgctacgtcgacagaccatggcaacaatttacagacggttcag
ctcctcatcaagaagaaccagacactgcagaaggagatccagggccatcagcctcgctgt
gatgatatattcgagcgcagccagagtatcctgaaggccgacagcccgaacgtggagtcg
atccggtcccgtctgtcggacctgcaggagctgtggagtctgatcatccaggagaccgag
aagcgccactccagactcgaggaggcccataaagcacagcagtactacttcgacgcggcc
gaggccgaagcctggatgagcgagcaggagctctacatgatgtctgaagagaaggccaag
gatgagcagagttcagtggccatgctgaagaagcaccagatcttggagcaggcggtggag
gactacgcggagactgtgcaccaactgtccaagaccagccgaggcctggtggccgccaac
caccccgagagtgagaggatcggcatgcgtcaatcacaggtggataagctttacgctgga
ctgaaggacctatcagaggagaggagaggcaaacttgaggaaaggtttaggctcttcacg
ctgaaccgagaagtggatgatctggagcagtggatcgccgagagggaagtggtggctgga
tctcacgagctcggacaagactacgaacacgtcactatgctgcaggaacgcttccgtgaa
ttcgcgcgggacaccggaaacatcggtcaggagcgtgtggacggcgtgaaccgcatggcg
gacgagctgatcaacgctggccacgccgacgccgcgactgtggccgagtggaaggacggt
ctgaacgaggcctgggccgatctgctggagctcatcgacacgcgcacacagattctcgcc
gcatcctacgagctgcacaagttctaccacgacgccaaggagatcctgggccgaatcctg
gacaagcataagaagcttccggaagagctgggccgagaccagaacacggtggaaaccttg
cagaggatgcacaccacctttgagcacgacatccaagcacttgggacgcaggtccggcag
cttcaggaagacgcggtgcgcctgcagtccgcatacgccggagataaggccgacgacatc
cagcggcgcgagggcgaggtgttggaggcctggagaagtctcctggaagcctgcgagggc
cggcgcgctcgactgctcgacaccggggacaagttccgcttcttcagtttagtgcgggac
ctcatgctctggatggaggacgtcatacgcctgatcgagactcaggagaagcccagggat
gtttcatctgtggagcttctcatgaacaaccaccagggcatcaaggctgagatcgatgcc
cgtaacgacagcttcacggcctgcatcgagctgggcaaatctctgctggcacgcaaacac
tacgcttcagaggagattaaagagaagttgctgcagttgacggacaagaggaaagatatg
attgacaagtgggaggaccgatgggagtggctaagactgattttggaagtgcaccagttc
tctcgggacgcgggcgtggcggaggcgtggctgctgggacaggagccgtatctgtccagt
cgagagatgggtcagagtgtggacgaggtggagaaactcatcaaacgacacgaagccttc
gagaagtcagccgcaacctgggaggagcgattctcagcgctcgagagactgacaacgttg
gagttattggaagtgagacgacagcaagaggaagaagagaggaagaggaaaccgcccaca
ccggagccggtgcaggacacagacacacagcagagagaaggagagcagattgcccagaac
ggactcccatcagaccaggattcgccacgggatggtgtggatggtgagatgaacggagtg
gccgagaggagctcgaaggagccgagtccgatcccgtccccgagcgcggagagacgcggg
aaaggcagtcagtcctccactcttccggctaaagctcaggagaatccggcggcgcagctc
gaggcgttcctgcaccgcaaacacgagtgggagggacacaacaagaaagcctccagcaga
tcctggcataacgtgtactgcgtgatcaacaaccacgagatgggcttctacaaggacaat
aagagtgcaagtcagggcatcccgtaccacaacgagatccccatcagcctgaaggacgcc
gtgtgcgaggtcgccgtcgactacaagaagaagaagcatgttttcaagctcagagttact
gatggaaatgagtatctcttccaagccaaagatgatgaggagatgaacacatggattcag
gccatccagaacgccggcagcgtctcctcgtcctccgagaaatctgagatcacgcctagc
aaccagagcacgcccgcctccagccgcgcacacacgctcccggcaaccgtcaccatgacg
accgaatccagccccggcaaacgcgagaaagacaaggagaaggacaaagagaagcgcttc
agtctcttcagcaagaagaagcagtag
DBGET
integrated database retrieval system
