Squalius cephalus (European chub): 307150822
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Entry
307150822 CDS
T11930
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform 1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
scep Squalius cephalus (European chub)
Pathway
scep03018
RNA degradation
scep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307150822 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
307150822 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scep03019
]
307150822 (lsm4)
03041 Spliceosome [BR:
scep03041
]
307150822 (lsm4)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
307150822 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
307150822 (lsm4)
Spliceosome [BR:
scep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
307150822 (lsm4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
307150822
NCBI-ProteinID:
XP_079714493
LinkDB
All DBs
Position
22:complement(7520763..7530802)
Genome browser
AA seq
143 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVQSKGRGRGGMQQNKPQGKGRGGGPGRGGGTGRGIFGG
RGRGMPGTGRGQQQDKKPGKPQV
NT seq
432 nt
NT seq
+upstream
nt +downstream
nt
atgctcccgttatctttactgaagacagcacagaaccacccgatgctggtggagttaaag
aatggtgagacgtacaatggccatctggtcagttgtgacaactggatgaacatcaacttg
agagaagttatttgcacttcaagggatggagataaattttggaggatgcctgaatgctac
atcagaggaagcactattaaatacttacgaatccccgatgagatcatagatatggtgaaa
gaggaagtacaatcaaagggacgcggccggggaggtatgcagcagaacaagccacaggga
aaaggcagaggaggtggacctggaagaggtggtggaaccggcagaggtatttttggtggc
cgtggcagaggcatgccgggaactggccgtggacagcaacaagacaaaaagcctggtaaa
ccacaagtttga
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integrated database retrieval system
