Squalius cephalus (European chub): 307150973
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Entry
307150973 CDS
T11930
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog isoform 1
KO
K13174
THO complex subunit 5
Organism
scep Squalius cephalus (European chub)
Pathway
scep03013
Nucleocytoplasmic transport
scep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307150973 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
307150973 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scep03019
]
307150973 (thoc5)
03041 Spliceosome [BR:
scep03041
]
307150973 (thoc5)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
307150973 (thoc5)
Spliceosome [BR:
scep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
307150973 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF2542
Motif
Other DBs
NCBI-GeneID:
307150973
NCBI-ProteinID:
XP_079714799
LinkDB
All DBs
Position
23:complement(25400864..25414835)
Genome browser
AA seq
724 aa
AA seq
DB search
MSSDAVKKRKPKVIRSEGGTPEAKRGRGESDQLSAVSSDVKFRKVRLRQVKVKIPAGPHL
IGQRKLFTAKNKEVRVYNEEVELEGRDPQQDYMLYKDTCAALAKLMAEIQELKAGGVKDG
SVEIEERRRQSSVHFITLKKLNRLAHMRLKKGRDQTHEAKQRVDVLHLQLQNLLYEVMHL
QKEIGKCLEFKSQHEEIELVSEEEFFQEAPAEISRPHVTRDDQHQLTLARLDWELEQRKR
LAEQYKTSLTSKEKIQKAIEQKREYLSSLQPGLQNIMQASVPVQEYLKMPFEHMQKQAEV
ARHLPPPLYVLLVQAGAYGQACDKHLSVSISGDVDEAKALSRPPEDSQDDESDSDAEEEQ
QNTKRRRATVGAQLDDKRKEMLRRHPLSLCVDLKCKDGSVLHLFFYYLMNLNILTVKTKV
STSTDLSGAISAGELLNPESLLNCLYASDHGKETPNPSNRYQFDKVGITTFSDYVSDLGH
PYVWVQKLGGLQFSSDGAQSGLRGSALSASHMERTIKLLRGRLQARLSLHKQFSSLEHSI
IPVSSECQHLFPAKVISGLTRWTMMSHQEFTELGFVQHVLKAGLVHETDLFFMAVVERGT
ARVSAAVVLNPRYPDVAPLFSLSLVWKGERSGRSDDNLRAVESEVNVFRSELQGPRPGLQ
LLTNQIQRLCVCLDVYLETESQVCDGSEGPKEFPREKMCLRTARGPSRLKPFKYNHPQGF
FSHR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagacgctgtgaagaagagaaagccgaaggtcatccgcagtgaaggaggaact
ccagaagccaagcgcggtcgaggagagagtgatcaactgagtgcagtcagttcagatgtc
aagttcaggaaggtcaggttgaggcaggtgaaggtcaagattcccgccggacctcatctt
atcggacagaggaagctgtttacagcaaagaataaggaggtccgtgtgtataatgaggag
gtggagcttgagggcagagacccgcagcaggactacatgctgtataaggacacgtgtgcc
gctctggccaaactcatggcggaaatccaggagctgaaagccggcggcgtgaaagacgga
agtgtagagatcgaggagagacgcagacagagcagcgttcatttcattaccctgaagaaa
ctcaaccgcctggcacacatgcgactgaagaaaggccgagaccagacacatgaggcgaag
cagcgagtggatgttcttcacctgcagctgcagaatctgctctatgaggtcatgcacctg
cagaaagagatcggaaaatgtcttgagttcaagtctcagcatgaggagatcgagctggtg
agtgaggaggagttcttccaggaggctccggctgagatctcgcgccctcacgtcacacgg
gacgatcagcaccagctcacgctcgcacgcctggactgggaactagagcagaggaagagg
ttggcggagcagtataagacgtctctgaccagtaaggagaagattcagaaagccattgag
cagaagagagaatatctgagcagcctacaacctggactgcagaacatcatgcaggcgtct
gtcccagtgcaggagtatctgaagatgccgttcgagcacatgcagaagcaggccgaggtc
gcccgtcacctgccgccgcctctgtatgtgctgttggtccaggccggggcgtacggacag
gcctgcgacaaacatctgtctgtgagcatcagtggagacgtggatgaggccaaagctctg
tccagacccccggaggactcgcaagatgacgaaagtgattcggacgcagaggaggagcaa
cagaacacgaagcgccggcgggcgactgtaggagctcaactggatgacaagcgtaaagag
atgctgagacgtcaccctctctcgctctgcgtggacctcaagtgtaaagacggcagtgtc
ctgcatctgtttttctattatctcatgaatctcaacattctgactgtgaagaccaaagtt
tccacctctacggatctgtctggggccatcagcgccggcgagcttctgaacccggagagt
ttgctgaactgtctttatgcgtctgatcacggcaaagagacgcccaacccttccaaccgc
taccagtttgataaagtcggaatcactacgttttcggattatgtatcagatctcggacat
ccatacgtttgggtgcagaaactgggcggcctgcagttctcctctgatggtgcacagtcg
gggctgagaggaagtgctctgagtgccagtcacatggagaggaccataaaactgctgcga
ggaagactacaggctcgactgtccttgcacaaacagttcagctcactggagcacagcatc
atcccggtctccagcgaatgccagcatctgtttcccgctaaagtgatttccggtctcaca
cgctggaccatgatgagccaccaggaattcactgagctgggcttcgtacagcacgtgttg
aaggccggtctggtgcatgagacggatctgttcttcatggcagttgtggagagaggaaca
gcacgtgtgtcggccgctgtggtgttgaacccccgttaccctgatgtggcgccgctcttc
tcgctctctctggtctggaagggagaacgcagcggccgctctgacgataacctgcgggcg
gtcgagagcgaggtgaacgtcttccggtccgagttgcaggggccgcgcccgggcctccag
ctcctgaccaatcagatccagcgtctgtgtgtgtgtctggatgtgtatctggagacggag
agtcaagtgtgtgacggctcagagggacctaaagagtttcctcgagagaagatgtgcttg
cgcactgccaggggtccgagtcgtctgaagcccttcaagtacaatcacccgcagggcttc
ttcagccaccgctga
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