Squalius cephalus (European chub): 307153351
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Entry
307153351 CDS
T11930
Symbol
lrrc4bb
Name
(RefSeq) leucine-rich repeat-containing protein 4B isoform 1
KO
K16360
netrin-G3 ligand
Organism
scep Squalius cephalus (European chub)
Pathway
scep04514
Cell adhesion molecule (CAM) interaction
scep04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
307153351 (lrrc4bb)
04517 IgSF CAM signaling
307153351 (lrrc4bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scep04515
]
307153351 (lrrc4bb)
Cell adhesion molecules [BR:
scep04515
]
Immunoglobulin superfamily
NGL family
307153351 (lrrc4bb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
ig
LRR_9
V-set
LRR_14
LRRNT
Ig_2
VEGFR1-3_N_Ig-like
Ig_6
DUF4307
Motif
Other DBs
NCBI-GeneID:
307153351
NCBI-ProteinID:
XP_079718882
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All DBs
Position
25:3639336..3648176
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AA seq
720 aa
AA seq
DB search
MQAAIVTGFFSPSPLIWLVQLLLWPHLLGPRLAEASPACPNPCSCSNQASRVICTRKGLN
EVPQSISSNTRYLNLQENSIQLIRSDTFKHLNHLEILQLSKNQIRQIEVGAFNGLPNLIT
LELFDNRLPLVPSQAFEYLSKLRELWLRNNPIETLPAYAFHRVPSLRRLDLGELRKLSFI
SEAAFEGLLNLRFLNLGMCGLKDVPNLTPLVRLEELELSGNQLGVVRPGSFQGLVSLHKL
WLMHSRISVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLQQLERVHLNHNPWVCNCD
VLWLSWWLKETVPDNSTCCARCHAPPGTKGRYIGDLDQRDFTCYAPVIVEPPTDLNVTEG
MAAELKCRSGTSMTSVNWLTPNGTLMTHGAYKVRISVLHDGTLNFTNVTMQDTGPYTCMV
TNSAGNTTATAVLNVSAPDPGNGYSYFTTVTVETVETGQEGHESARQFVNETIISFGPTA
TSASAGPTGSMLSSLSPRATRAPDRPFTVSITDVANLSGLEDVMKTTKIIIGCFVAITFM
AAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDEIGSAGTSGITGGSTVHTGAGTGGGS
GQSPRIHEPEIMTLPSVGQSDHLNHYYKAHHFNNNVLGLNMTTGMLNNKPNLSSQNQAST
MKIGTGDTIPGSTSPPLPIPIPMAMTFHGTLKGLSHVPNMQTEPLLLSNGSKESVQETQI
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctgctatcgtaacaggctttttcagcccctccccccttatctggttggtccaa
ctgttgttgtggccacacctccttggacctcgattggccgaagccagtcccgcctgcccc
aatccctgcagctgttccaatcaagccagtcgagtgatctgtaccagaaaaggcttaaat
gaagttccacagagtatctcgtccaatacgcgatacctcaacctccaggagaactccata
cagttgatcaggtcagacaccttcaagcacctaaatcatctggaaattttacagttgtct
aagaaccagattcgtcagatagaagtgggagcgttcaatggccttcccaatctcatcacc
ctggagctttttgacaacagactcccactggtaccatcacaggcgtttgagtacctgagc
aagctgcgtgaactctggctaaggaacaaccccatagagacactcccagcgtacgccttc
caccgcgtgccgtcactgcgacggttagacctcggtgagttgcgcaaactcagtttcatc
tcggaggccgcattcgaagggttgctgaacctacgtttcctgaatctgggcatgtgcggg
cttaaggacgtacccaacttgacgcctctcgtgcggctagaggaactggagctgtcggga
aaccagctgggcgtggtgcgtcctggatcgttccaaggcctggtgtctctacacaaactg
tggctcatgcactctcggatctctgtcattgagaggaatgcctttgatgacctcaagaac
ctggaggagctcaatctgtcgcataactctctgcattcattgccacacgatctcttcact
ccactgcagcagttagagcgtgtccatctgaaccacaacccttgggtttgcaactgtgat
gttctgtggttgagctggtggcttaaagaaaccgtacctgataactccacttgttgtgcc
cgatgccatgccccaccaggtactaagggcaggtacattggtgaccttgatcagagagac
ttcacctgctatgcacctgtgattgtggagccaccaacggacctgaacgtgaccgaggga
atggcagcggagctaaaatgccgcagcgggacatccatgacttctgttaactggttgacc
cccaatgggaccttgatgacccatggagcgtacaaggtccggatctctgtcctgcatgat
ggaaccttgaatttcaccaacgtgaccatgcaagacaccggaccatacacctgtatggtc
accaactctgctggcaacaccacagcaactgctgtgttgaacgtctcagctcctgatcca
ggcaatggttacagctacttcacaactgtcactgttgaaactgtagagacggggcaagaa
gggcacgaatcagctcggcagttcgtcaacgagacgattattagctttggaccaacagcc
acatctgcatcagcaggtcccactggttcgatgctgtcctccttgtcaccgcgagctacg
cgtgcacccgatcgcccgttcaccgtctccatcacagacgtcgccaacctgtcgggtctt
gaggacgtaatgaagacaactaagatcatcataggctgctttgtggccatcaccttcatg
gcggccgtgatgctggtcgtcttctacaagcttcgcaagcagcaccaactgcacaaacac
cacggcccggcgcgcgccatcgagatcatcaacgtcgaagatgagattggatctgcggga
actagtggcatcactggagggagcactgtccacaccggagcgggaactggtggaggaagc
gggcagagtccaaggattcatgaacctgagatcatgaccctgccgagcgttgggcaatcg
gatcacctgaaccactactacaaagcgcaccactttaacaacaatgtgctgggcttaaac
atgaccactggaatgctcaacaacaaacccaatctttcctcccaaaatcaggcttcgacc
atgaaaatagggaccggtgacaccatccctggctcgacctcacctcccctgccaatcccc
atcccaatggcgatgactttccatggaactctgaaaggccttagtcacgttcccaatatg
cagactgagccgctgttgctatcgaatggctccaaggagagcgttcaggagacccagatc
tga
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