Squalius cephalus (European chub): 307155065
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Entry
307155065 CDS
T11930
Symbol
atg13
Name
(RefSeq) autophagy-related protein 13 isoform 1
KO
K08331
autophagy-related protein 13
Organism
scep Squalius cephalus (European chub)
Pathway
scep04136
Autophagy - other
scep04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
307155065 (atg13)
04136 Autophagy - other
307155065 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scep04131
]
307155065 (atg13)
03029 Mitochondrial biogenesis [BR:
scep03029
]
307155065 (atg13)
Membrane trafficking [BR:
scep04131
]
Autophagy
Autophagosome formation proteins
ULK complex
307155065 (atg13)
Atg1 complex
307155065 (atg13)
Mitochondrial biogenesis [BR:
scep03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
307155065 (atg13)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
307155065
NCBI-ProteinID:
XP_079721527
LinkDB
All DBs
Position
3:complement(26776472..26786500)
Genome browser
AA seq
536 aa
AA seq
DB search
MDSDLSPQDKKDLDKFIKFFALKTVQVIVQARLGEKITTCSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPGIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKDIKVSYTVYNR
LSLLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGDVQLTGLGEGFQTVRVGIVGTPI
GTITLSCAYRINLALMSSRQFERTGPIMGIIIDHFVERPFTNMAHMHPCSYRTPGEDEGG
TYAGIEDSQEVCTTSFSTSPPSQCACTVSKAHFKTPKPALMATLKVPLMGLGISQQLYSS
RLSYQTPALGTVDLCHPTTCTTAVHPHQMVVPGKEGGVPQVPAQPNHGTAAEHGRIPSCP
TGQSHQPAPPTSCGSEVKTVCPSDAPETTFTRKVGAFVNKATTQVTTNSLDLPFAAFAPR
VYDLEENDPMVHPPPSPAPSSPLQGSLHSNSSSHSGGQPHDDFVMVDFKPAFSKDDLLPM
DLGTFYREFQNPPQLASLSIDVSAQSMAEDLDSLPEKLAIYEKNIDEFDAFVDTLQ
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgatctgagcccacaggacaagaaagacttggataaattcatcaaattcttt
gccttgaagacggtgcaggttatagttcaagcccgacttggagagaagatcaccacatgc
tcatcttcatcaccgaccggttcagactggtttaatctggcaataaaagacatccctgag
gtgactcatgaggcaaaaaaagctcttgctggacagctgcccggcatcggccgatccatg
tgtgtggagatctccctcaaaacctcagagggagactccatggagctggagacatggtgt
ttggaaatgaatgaaaagtgtgataaggacattaaagtgtcctatacagtttataatcgg
ctgtctctgctgctcaagtctttactggccatcacaagggtgacacctgcttacaagctt
tcacgtaaacaaggccatgactatgtcatactctacaggatctattttggagatgttcag
ttgacaggtctcggggaagggttccagacagtgcgagtgggtattgtaggcactcccata
ggcaccatcactttgtcctgtgcgtatcgcattaatttggccctcatgtcttcaaggcag
tttgagaggacaggccccatcatgggtattatcattgatcattttgtggagcgacccttc
actaatatggcacacatgcatccttgcagttacagaactcctggagaagatgagggaggg
acttatgcaggaatagaagactctcaggaggtgtgcaccacatccttttccacctcccca
ccatcacagtgtgcgtgtactgtaagtaaggcacattttaagacacctaagccggctctg
atggccacactgaaggttcccctcatggggcttggcatctcacagcaactgtacagctct
cgtctgtcatatcagactcctgccctgggaactgtggatttgtgccatcctacgacttgt
actactgctgtacatcctcaccagatggttgtgccgggtaaagaaggtggagtccctcag
gtgccggctcaacctaatcatggcactgcagctgagcacggtcgtatcccatcatgcccc
actggacagtcccatcagccggcaccgcccacatcctgtggcagcgaggtgaagactgtg
tgcccttctgatgctccagagacaaccttcaccaggaaagttggagcttttgtcaacaaa
gccaccacacaggtgacgacaaacagtctggatcttccttttgctgcgtttgctccaaga
gtctatgacctggaagagaacgacccaatggtgcaccctcctccatccccggccccatca
tctcctttgcaaggcagcctgcactcaaacagctcgagccacagcgggggacagccacac
gacgactttgtcatggttgactttaaaccagcgttctctaaggatgaccttctgccaatg
gatctaggcactttctatagagagtttcaaaaccctcctcaactcgcaagcctgtccatc
gatgtcagcgctcagtctatggctgaggacttggactctcttccagagaaactggccatt
tatgagaaaaacattgacgagtttgatgcatttgtggacaccttacaatag
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integrated database retrieval system
