Squalius cephalus (European chub): 307155099
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Entry
307155099 CDS
T11930
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
scep Squalius cephalus (European chub)
Pathway
scep04512
ECM-receptor interaction
scep04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307155099 (frem1a)
04518 Integrin signaling
307155099 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
scep04091
]
307155099 (frem1a)
Lectins [BR:
scep04091
]
C-Type lectins
Lecticans
307155099 (frem1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
UL45
Motif
Other DBs
NCBI-GeneID:
307155099
NCBI-ProteinID:
XP_079721618
LinkDB
All DBs
Position
3:complement(53252913..53292637)
Genome browser
AA seq
2163 aa
AA seq
DB search
MTAIDRTYLPVLLLGLLHQIQGSLVKNNLGLKVKRGQSVFLQEGDLQFHIPRDKDACKLE
VVLNEPITQRVGTLSPQVFDCHFLADEVKYTHNGCPILKEDTVKLRLYRFTETETYSELF
SLSVEIMEPDCNVIRFGSQSLEVPEFYGLSNILDGNVVSFHYEHRHNIECAVQMTTLETH
LPVHGQLVTGEPEKPEGPRGDEPDSFVPLRRQLDNKARAHCKSDDCLKGLKLLKIIKVPC
NDFLMMGIRYHHIDPPSPDIDYIAIRLDLIDTRSRSIIQSEQAWIPVTIKDAMPNQPPKP
AFMSMFILEVDQFILTPLSTATLDAEDDETPKQRLVFNITNPPNEGFITHLSDHTKPISS
FSWMDLNDMLISYQPPNSSHTQRRNYEVEFEVHDFYFEKSQPVVVHVSIRTADTNAPRVS
WNMGLSLLEGQSRPITWDQLQIVDNDNLKAVRIITVDGLQHGRLTVRGGKGFMFTVKDIK
DGAVHYHHDDSDTTKDYIVFRITDGLHQTRHKFPINVLPKDDSPPFLITNMVLELSEGQM
GLLRGSILQACDMDSSDDYIMFNITRPPQAGEIMKIPGPGITGYPVYRFLQKDLFHSIIY
YRHSGSEVFDDSFEVVLSDFHDPPNLSEPQVIVIQIQPVPDQPPQEAPGVTRHLVVNETD
VTYLTKQQLHFVDLESPDSELTYTVTTPPFYSTTYGGSDAGRLFLVDSIPKFKKDPNAPM
LRLFTQNAVNYMKVAYMPPILDIGPYPQHIQFILSVTNQQGSMTAGICFNITILPVDNLA
PEVHARQLTVDEGGESWVSEEHMRLKDQDSLEDSLHVELKTKPQHGSIYLDGTPMSPGQT
FTVRDLKSLKVRYRHDSSETEHDYIKFIATDGINMADFVLHVKVAPVNDEVPVLVPGLKP
IIACAEGQEVVITIEYICATDPDSDDSTLMYMIARQPYYGVVQRNDIVVDRFIQADITAG
LISYRHTGHEIGLQPRHDIVTFVISDGESGLLPSCCSDKATIFSAQTPEIQNSLPVYDLN
ITVYPVNNQPPSIAVGEVFVVNEGGSASITVTHLRVEDQDSAPEDLKLILVAPPQFGYIE
NILPSPGFEKSNMGISIASFTYRDVLNGHINYVQSRHQRMEPTTDQLMLHVSDGKQQSSS
VPFYIIISPTNDEIPDFLARNITVREGDMKELDPSIISAVDLDVPRNHLMFSIVQQPQHG
SIMTVPHGNDVTHYKRGSEIPVEHFTMDDLRSGMTLMYMHDDSESEQDGFIVQLSDGKHQ
LQKHVQVKVLPVNDEEPQIIRNTGLEMEAGESRLISSAVLSAHDKDTSSSDIIYVFESIP
RHGVIQMKVGTEWVSVSAGMNCSQQVLDMNLLRYLHTSHPGAPAADFFVFHLMDGKNLSP
AQHFHITVKELEKGDIALFLKPVRSSRGERVVLTTDVLLAVDGTDKPEELLYVISVPPAH
GHVEHIKHTGVKIESFSQLDVAANLVCYVHDNRATSPKETLQFVVSNGISTRNGTLEILV
EMTDKVLPTLVHNTGLRVPQGSTITLTPDAIFLADPDSPHTALSYKVVHPPQYGQLLLKG
QTLVAGSIFTQQNIQDLAVSYRHSGGASQIDRFRFTASDSTERGFLLDGKVQTEPVFFIL
QIEALDSSAPQIAVLETLWRVELLKDGRYGIFISSRELKAQDKNSADGDLIYHILRPPYF
GYLENYTNGEFVRHRFSQRDLNRRNILYIINSALDSLTDSLEFSVSDALGKSGPSHKLEF
SWASVELTRTEYIICESQGSVSLTIQRNGNVQDSSYVTVQVKELTASAGKDFISASSLIQ
FDPGMVSRVWRVEIVQDSLEEGDEKFEVTLVSPVGAVLKDKSKATIFIKDTNGQCRENRI
KAGASIQGQEVEPGPYPQHGSIQVETLPFSHGYIRGDGDITAEAPSTAKKRLRVIGNGKV
VQPSEIIRHGSDVVYRYHGMVSMAVEEDNADSRADRKAQVQVTSWGQQRAPSLRTKLQQT
DRVLQPSGTRPSSKPCSPELSGFLHYNDSSGQMFHCNGVSWRPWTPSNETVKAQKCPRGW
TYHNDFCYILSTERKATWSAAVRACRESFNGNLVSVLSKGDMDWLWDFSERKPFWIGLND
RESKGRWEWVGGEPVTYTNWRRSPPKNRKKGTRKCVLVWRKTKWQMRDCKKGKGHRYVCY
VKM
NT seq
6492 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaatagataggacatatttgcctgtcctcttgctgggacttctccaccagatt
cagggctctctggtaaaaaacaatcttggtcttaaggtaaagagggggcagtcagtcttt
ctgcaggaaggggacttgcagtttcatatacccagagacaaggatgcctgcaagctggaa
gttgtgctgaacgagcccattacacagcgggtcggcacactgtccccacaggtttttgac
tgtcactttttggcggatgaagtgaaatacactcataatggatgtccgattttaaaagag
gatactgttaaacttcgtctgtacagatttacagagacagagacctacagtgagctgttc
tctctcagtgttgaaatcatggagcctgactgtaatgtgattaggtttggatcacagagt
ctcgaggtgccagagttttatggcctctccaatatcctagacggtaacgttgtgtccttc
cactatgaacaccgacataatattgagtgcgcagttcagatgacaactttggagacacat
ctacctgttcacggtcaactagtcaccggggaaccggagaaaccagagggaccgagagga
gatgaaccagatagctttgttcctcttcgaagacagctggataataaagctcgagctcat
tgtaaaagtgacgactgtctaaagggtcttaaactgctgaagatcatcaaagtaccatgc
aatgatttcctcatgatgggcatccgttaccaccacatcgaccctccatctccagacata
gattacatcgcaattagactggatctcatagacactcgtagcagaagcataattcagtca
gagcaggcctggatcccggtaaccattaaagacgcgatgcccaatcagccgcccaagcct
gcttttatgtccatgttcatcttagaggtggaccagttcattctgactcctctctccacg
gcaactctggatgcggaggatgatgagacgcccaaacagaggctggtgttcaacatcact
aacccccctaatgagggcttcattactcatttgtctgatcacaccaaacccatctcctcc
ttctcctggatggatctcaacgacatgctgatcagctaccagcctccaaactccagtcac
acgcagcgtaggaactatgaggtggagtttgaggtgcatgatttctactttgagaaaagc
cagcctgtggtggtgcatgtgtcaatcaggacagctgataccaatgcaccaagagtatca
tggaacatgggtctcagtctattggaaggtcagtcccgtccaatcacatgggatcagctg
cagattgttgacaatgacaacctgaaggctgtgaggatcatcactgtggatggcctgcag
catggcagactaactgttagaggtggaaaaggtttcatgttcactgtgaaggatattaag
gatggtgcggtacactaccatcatgatgacagtgacactactaaagattatatagttttc
cggattactgatggcttacatcaaactagacacaagtttcccatcaacgtcctgcccaaa
gatgacagtccacccttcctcattaccaatatggtgttggagctgtctgaaggtcagatg
ggtcttttgagaggatccattttgcaagcctgtgatatggactcaagtgatgactacatc
atgttcaacatcaccagacctcctcaggcaggggaaatcatgaagattcctggtcctggg
ataacaggataccctgtttaccgttttcttcagaaggacctcttccattccatcatctac
tatcggcactcaggcagtgaggtgtttgatgactcttttgaggtggtgctctctgatttt
catgaccctcctaatctttcagagcctcaggtcattgtgattcaaatccagccagtccct
gatcagcctccacaagaggcaccgggtgtgaccaggcacttggttgtcaatgagactgat
gtcacctacttgaccaagcaacagctgcactttgttgacttggagtcaccagatagtgag
ctcacatacaccgtaaccaccccacctttctacagcaccacctatggagggtctgatgca
ggaaggttgtttctggttgatagcatcccaaaatttaaaaaggacccaaacgccccgatg
cttagacttttcactcagaatgcagtcaactacatgaaagttgcttacatgcctcccatc
ctggacattggaccctacccccagcacatccagtttatcctgtcggtgaccaaccagcaa
ggcagcatgactgcgggaatctgcttcaacataacgattctgccagtggataacctggca
ccagaggtacatgcgagacagctgacggtggatgaggggggagagagctgggtgagtgaa
gaacacatgcgtctaaaggaccaggactcactcgaggactctctgcacgtggagctgaag
acgaaacctcagcatggcagtatttacctggatggcacacctatgagtccaggccagact
ttcacagtcagggatctgaaaagcctaaaagttagatatcgccatgacagctctgagaca
gaacatgattatattaaattcattgccacggatgggataaatatggctgactttgtacta
catgtcaaggtggcgccagtcaatgatgaggtgccagtgctagtgccaggtttgaaaccc
attatagcctgtgcagagggacaggaagtggtcatcaccattgagtacatctgtgccaca
gatccagacagtgatgatagcacattgatgtatatgatcgcccgacaaccatattatggg
gtagttcaaagaaatgacattgtggtggaccgcttcattcaagcagatataactgctggc
ttaatttcctatagacacacaggacacgagattgggctacaaccacgtcatgacattgtc
acgtttgtgatctctgatggagaatcaggactacttccttcctgttgcagtgacaaagcc
actatattcagtgcacaaacacctgaaatacagaattccctgcctgtctatgaccttaat
atcaccgtttatcctgtgaacaaccaaccaccatctattgctgttggagaggtgtttgtg
gtgaatgaaggagggtcagcctctatcacagtgacccatctgagagttgaagaccaggac
tctgctccagaagatctcaagctcatcctggttgctcctccacagtttggctacatagag
aacatcttacccagtccaggatttgaaaagagtaacatgggaatcagtatcgcctctttc
acctacagggatgtgttgaatggacacattaactatgttcagtctagacaccagaggatg
gagccgaccactgaccagctcatgttgcatgtgtccgatgggaaacagcaatcctcttca
gtcccgttctacatcatcatcagtccgaccaatgatgagattccagacttcctggccaga
aacatcacggttcgggagggagacatgaaagagttggacccatctataatcagtgcggtg
gatcttgatgttcccagaaaccatttaatgttcagcatagtccagcagcctcagcacggc
tccatcatgactgtcccacacggcaatgatgtgacgcattacaaacgcggatctgagatc
cctgtggagcacttcactatggacgacctcaggagtggcatgactctgatgtacatgcac
gatgactctgagagtgagcaggacggatttattgttcagctctctgacggaaaacaccag
ctccagaaacacgtgcaggttaaagtactgcctgtcaatgatgaggagccacaaattatc
cggaacactggccttgagatggaggctggggagtccagactgatctccagtgctgtgctt
agcgctcacgacaaagacacttcttcttctgacatcatctatgtgtttgagagcataccg
agacatggtgtcattcagatgaaggtcggcacagaatgggtgtctgtatctgcaggaatg
aactgctctcagcaggttttggatatgaatctgttacggtaccttcacaccagtcatcct
ggagcacccgctgctgacttctttgtctttcacctgatggacggcaagaacctctctcct
gctcaacacttccacattacagtcaaagaactggagaaaggagacatagcattgttcctg
aagcctgtgaggtctagtcgaggggagcgtgtggttctcaccacggacgtcttgctggcg
gtagacggcactgacaagccagaggagctgctctatgttatctctgtacctccagcacat
ggtcatgtggagcacatcaaacacaccggcgtgaaaattgagtcgttcagtcagctggac
gtagcagcaaacctggtgtgttatgtacatgacaacagagccacttcacctaaagagacc
ctgcagtttgtggtcagcaatggcatatcaactcgcaacgggaccctggagatcttagtg
gaaatgactgataaggttctgcccacactagtgcacaacactggtctacgggttccccag
gggtccaccataactttgacacctgatgccatattcctggctgatcctgacagcccacac
actgccttgagctacaaggtggtccaccctccccagtatggccagttgcttttgaaggga
cagacactggtggctggtagcatttttacccagcagaacattcaggatctggctgtttca
tacagacactctggaggagcttctcagatcgatcgcttcagattcacagcctctgacagc
acagaaagaggattcctgctggacggaaaagtgcaaactgagccggtcttcttcattctt
caaattgaagctctcgacagctcagctccacagatagcagtgctggaaaccctgtggaga
gtggagctcctcaaagatggtcgttatgggatctttatttcctccagagagcttaaggct
caggataagaactctgcagacggtgatctgatctatcacatcctcagaccgccttacttt
ggatacctggaaaattataccaatggtgagtttgtgaggcatcgtttctctcagagggat
ctgaacagaaggaatatcctctacatcataaactctgctctggactctttaactgacagc
ctggagttttccgtgtctgatgcactgggcaaatctggaccctctcacaaattggagttt
agctgggccagtgtggagctgaccaggactgagtatatcatatgtgagagtcaggggtca
gtctcactaaccatccagaggaatgggaatgtgcaggactcgtcttatgtgactgtacag
gtgaaagaactaacagcatctgctggaaaggattttatatcagcttcatctttgattcag
tttgacccagggatggtcagtcgagtatggagagtggagattgttcaggattctttagag
gaaggtgatgagaaatttgaggttaccttggtatctccggtgggtgcagtgctgaaagac
aaatctaaagccaccatcttcataaaggacacaaatgggcagtgcagagagaaccgaatc
aaagcaggagctagtattcaaggccaggaggttgagccaggcccgtaccctcaacacggc
tccatccaggtggaaacattacctttctctcatggctatatcagaggtgatggagatata
acagctgaagctccctccactgcaaagaaaagactcagagtcattgggaatggaaaagtg
gttcagccttcggaaatcattcgtcatggatctgatgtcgtttatagatatcacggcatg
gtatcgatggcggtggaggaggacaacgctgactccagggctgacagaaaggcacaggtg
caggtgaccagctgggggcagcagcgcgctccttcactcaggacaaaactacagcaaact
gacagagttctgcagccttctgggactcggccttcttctaaaccctgttccccagagctc
agtggcttcctccattacaacgacagctcaggtcagatgtttcactgtaatggagtctct
tggaggccctggacaccttctaatgagactgtgaaagcacagaaatgtcctcgaggatgg
acgtaccacaacgacttctgttatattctgagcacagagcgcaaagccacgtggagcgct
gcggtgcgggcctgcagagaaagcttcaatggaaacctggtcagtgttttatcaaaagga
gacatggactggctgtgggacttcagtgaaagaaaacctttttggattggtctgaatgat
cgtgaaagtaaaggccgctgggagtgggtgggtggagagcctgtcacttacaccaactgg
aggcggagccctccaaaaaacaggaagaagggaacaaggaagtgtgtcctggtctggagg
aagacgaaatggcagatgcgagactgtaagaaaggaaagggacaccgttatgtgtgttat
gttaaaatgtga
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