Squalius cephalus (European chub): 307155517
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Entry
307155517 CDS
T11930
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
scep Squalius cephalus (European chub)
Pathway
scep04382
Cornified envelope formation
scep04510
Focal adhesion
scep04512
ECM-receptor interaction
scep04518
Integrin signaling
scep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307155517 (col4a5)
04518 Integrin signaling
307155517 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
307155517 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
307155517 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
307155517 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scep04147
]
307155517 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
scep00536
]
307155517 (col4a5)
Exosome [BR:
scep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
307155517 (col4a5)
Glycosaminoglycan binding proteins [BR:
scep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307155517 (col4a5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
307155517
NCBI-ProteinID:
XP_079722336
LinkDB
All DBs
Position
3:complement(35786171..35840922)
Genome browser
AA seq
1679 aa
AA seq
DB search
MNLKCVGAVLVFLTLSTEVQESESAACHGCGTGSKCDCSGVKGEKGERGFPGLSGQPGVP
GFPGPEGPIGPRGEKGDDGPSGPVGTKGIRGPPGLPGFPGTPGIPGLPGQDGAPGPRGIP
GCNGTKGERGFPGSPGLPGLEGRIGLTGPMGQKGDPGEILYENRISENGDPGIDGRPGSR
GNPGPPGPQGPPGPSGPRGFEGRPGPPGPPGPKGNMGLNFQGPKGTQGERGLQGPPGPPG
QVGEVSGLPDTVIQQGEKGDVGPPGDPGYPGPPGPPGPQGGQKGNKGEPGEPGKRGKPGK
DGEQGLSGYPGDKGNAGTPGLPGRDGVRGEKGNQGPAGPPSFRDGQFPGIGGIGPKGDSG
EPGSPGPKGDRGLPGIQGPPGPQGLAGIGGPGPSGSPGLPGERGEKGDEGQPGISLPGPP
GRPGQQGPQGFQGPPGPPGIFNGDIECNRGLPGPSGLQGERGFPGERGPQGQKGETCVNC
FSNGNPVPGPPGFPGPPGNQGAPGLPGAKGERGYQGGQGLIGPPGIQGPQGPPGYPGEKG
DPGDAITGLGVKGDKGDTGFPGSPGLPGLDGRPGRDGVPGPPGLRGPPGSAVVKGAQGPP
GEPGFPGPPGDRGLSGPPGFGPQGPSGEKGIQGVSGRPGAPGAPGQKGEPGLAVPEKGER
GPSGRDGDPGLPGSPGNTGQAGQPGFPGPPGAKGDPGLPGIGLPGPPGTKGFPGIAGSPG
GPGIPGRPGLDGLPGQPGLPGPKGDPGFGLPGPSGPTGSPGSKGTPGPKGDSGFPGNPGA
PGRPGRDGAPGPKGDGGFPGGPGLRGPPGPPAIGIQGPPGPPGPPGSMGSPGVPGANGEK
GDRGPPGQSIPGLQGDRGSPGFPGPPGALGPPGGPGQPGQDGLPGLPGPKGDMGGMGAPG
PPGGPGNPGRPGFPGPKGDDGVPGRPGSTGSSGFKGDRGDPGIPGLPGPISPQQLYKGQK
GDPGVPGLSGPPGAKGVAGIPGESGFPGQDGRPGLPGSPGPKGDSGLPGTPGSPGAPGLK
GSMGDMGFPGITGMKGTPGQPGRSGQPGSPGSPGFPGPKGDPGTPGFGLPGNPGPKGEPG
TPGFPGNPGLKGQAGPPGPTGLTGSPGPKGDPGLPGFQGAPGIPGPKGLDGVTGPPGLSG
SPGRPGDPGRPGPAGNPGDKGLAGRDGIPGPAGQKGEQGAPGLGGPGPPGFPGSPGLKGD
PGFPGSPGSPGFPGPKGDPGFPGLPGQIGNVGPPGPPGLPAQGPKGIQGTPGPPGRSGSP
GPEGPRGPPGSGGVKGEKGLPGIPGIPGAPGQKGDSGSPGFPGNPGNPGPSGLKGDLGSQ
GVPGFPGPKGQPGPAGADGSPGQRGDPGTRGPPGDPGIAQSPIVVKGEPGPPGRPGPTGS
RGPQGPPGLQGLPGSPGNPGDPGQMGTPGFSGPPGRKGDTGQAGQTGLRGYPGPPGPDGI
PGPPGISGPNSGAHGFLITRHSQTTDVPQCPDGTGLIYDGYSLLYVQGNERAHGQDLGTA
GSCLRRFSTMPFMFCDINNVCNFASRNDYSYWLSTPQPMPMSMALITGEAIKPYISRCSV
CEAPAMVIAIHSQTIQVPSCPLNWGILWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRS
SPFIECHGRGTCNYYTNSYSYWLATVDVNEMFRKPQSETLKAGNLQTRVSRCIVCMKRT
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaagtgtgtcggcgcggtgttggtgtttctcacgttaagcacagaggtgcag
gagtcggagtctgcggcgtgtcatggctgtgggactggatcgaagtgtgactgcagtggg
gtgaaaggagagaagggtgagcgagggtttccaggtttatcaggccagccaggtgttcca
ggtttccctggaccagaggggccgattggacctcgtggagagaagggtgatgatggacct
tcagggccagtggggaccaaaggaataagaggacctcctggattgccgggcttcccagga
acaccaggaatcccaggtctcccaggacaggatggcgctcctggacccagaggaattcca
ggctgtaacggaactaaaggtgaaagaggattcccaggaagtccaggccttccaggttta
gagggtcgaataggtctaacaggtcctatgggacaaaagggggaccctggggaaatccta
tatgaaaatagaatttcagaaaatggggatcctggcattgatggcagaccaggctcaagg
gggaatcccggaccaccaggtcctcaaggtcctcctggtccttctggtcccagagggttt
gagggtcgcccaggccctcctggtccaccaggcccgaagggaaacatgggattgaacttt
caaggacccaaaggaacgcagggtgagcgtggattacaaggacctccaggaccaccagga
caggttggcgaagtatcaggcttacctgatacagtcatacaacagggagaaaagggtgat
gtcggcccacctggagatcctggttatccaggcccccctggcccccctggtccgcaaggg
ggccagaaaggtaacaaaggagaacctggcgaacctggaaagaggggaaaacccggcaaa
gatggtgaacaaggcctctctggatatccgggtgacaaaggaaatgcaggtactcctggt
ctacctggacgagatggtgtgagaggtgagaaaggtaatcaagggcctgctggacctcca
tcattcagggatgggcagttcccaggcataggcggaataggaccaaaaggagacagtggt
gagccaggatcacctggacctaaaggagatagaggacttccaggtattcaggggccacct
ggtccacaaggtcttgcaggaatcggaggtccaggtccttccggctcgccaggtttaccc
ggagagagaggagaaaagggtgatgagggacagcctggaatctcgctccctggaccacct
gggagaccaggtcaacaaggtccccaaggattccaagggcctcctggtcccccaggaata
ttcaacggcgacatagaatgtaatcgtggtcttcctggtccatcaggcctgcagggggag
cgtggatttcctggagaaagaggaccgcaaggtcaaaaaggagagacatgtgtgaattgt
ttcagtaatggaaaccctgtcccaggacccccagggtttccaggtcctcctggaaatcaa
ggtgctcctggtttgcctggagctaaaggagaaagaggataccaaggaggacaagggctc
ataggccctcctggaatacaaggacctcagggtccccctggataccctggagaaaagggt
gacccaggcgatgccatcactggtctgggtgtgaaaggagacaagggagacacaggcttt
cctggctctcctggtctgccgggactcgacggaagacctggtcgtgatggcgtgcctggt
ccccctggcctcagaggaccacctggttcggctgtggtgaaaggtgcacaaggtccacca
ggtgaacccggcttcccaggacctccaggagacaggggtctaagtggtcccccaggattt
ggtccacaggggccttctggagagaagggtattcagggcgtttcaggaagaccaggggct
cctggagctccaggtcagaaaggtgaacctgggttggctgtgccagaaaaaggtgagcgt
ggaccttcagggcgtgatggagatcccggattgccaggaagtccaggtaatacaggccaa
gctggacagcctgggttcccaggcccacctggagccaaaggagatcctggtcttcctggt
attggtttgccaggaccccctggtactaaaggttttcctggtattgctggttcccctggt
ggacctggcattcctgggcgaccaggtttggatggattacctggtcagcctggattacct
ggacccaaaggagatcctggttttggtctacctggcccttcaggtcctacaggatcccca
ggcagtaaaggtacacctggtcctaaaggtgattctggtttccctggaaaccctggtgca
ccaggtcgtccagggcgtgacggtgcccctggacctaaaggtgatggtggttttcctggt
ggtcctggtcttcgtggtcccccagggccccctgccattggcattcagggcccccctggt
cctcctggacctcctggatctatggggtctcctggagtccctggtgcgaatggagagaaa
ggagaccgtggccccccaggtcagagtattccagggttgcaaggtgacagaggaagccct
ggatttcctggacctcctggcgcacttggtccacctgggggtccaggacaacctggtcaa
gatggcctaccgggactgcctgggcctaaaggtgacatgggtggcatgggtgctccagga
cctccaggtggccctggcaaccctggcagaccaggctttccaggaccaaaaggagatgac
ggtgtcccaggacgaccaggaagcacaggttccagtggatttaagggagacagaggtgac
ccaggcattccaggcctacctggcccaatatcacctcaacagctatataaaggacaaaaa
ggagatcccggagttccaggtttaagcggaccaccaggagcaaagggtgttgccggtatc
cctggagaatctggtttccctgggcaagatggaaggccaggactaccagggtccccaggc
cccaaaggtgattctggtctcccaggaactccagggtctccaggagcccctggactgaag
ggtagcatgggagatatgggatttccaggaattactggaatgaaaggaacccctggccaa
cctggccgatcaggccagcctggatccccaggatcaccagggttcccgggacccaaaggt
gatcctggcacaccaggatttggattaccaggaaatcctgggccaaagggtgaaccaggc
actccaggattccctggaaaccctgggctgaaaggccaagctggccctccaggacctaca
ggcttgactggtagccctggaccaaagggtgatccgggactcccaggattccaaggggca
cctggcattcctggacctaaaggtttggatggtgttacaggccctcctggtcttagtgga
tcacctggaagaccaggagatcctggacgacctggaccagccggcaatcctggcgataaa
ggtcttgctggtcgtgatggtattccaggacctgcgggacaaaagggtgaacaaggtgct
cccggccttggtggcccaggcccgcccggttttcccggttcaccagggcttaaaggagac
cctggttttccgggttctcccggaagtcctggatttcctggtccgaaaggtgacccggga
ttccctgggttgcctggtcagattggcaatgtaggaccacctgggcctccaggcctgcct
gcgcaggggcctaaaggtatccaaggcacacctggtccccctggaagatcgggttctcct
ggccctgagggtccccgtggacctccaggtagtggaggagtgaagggtgagaagggcttg
cctggaatccctgggatacctggtgcaccaggacagaaaggagatagcggttcccctggc
tttccgggtaatccaggaaatccagggcctagtggcctgaaaggagatttgggatctcaa
ggtgttcctggattcccaggacctaaaggacagcctggccctgctggagctgatggcagc
ccaggacaacgtggggaccctggaactagaggacctcctggtgacccaggcattgctcaa
tcgcctattgttgtgaagggcgagcctggtccacctggacgacctggaccaacaggcagc
agaggcccacaaggacccccgggattacagggtcttccaggttcacctggcaaccctggt
gacccaggtcaaatgggaactccaggatttagcggcccacctggaaggaagggagataca
ggacaagctggacaaacaggtctgcgtggttatcccggccctcctggtccagatgggatt
ccgggccctcctggtatctcaggaccaaattctggagcacatggttttctgatcactcgc
cacagtcagaccacagacgtgccacaatgtccagatggcacaggccttatctatgatggc
tactctttactctatgtgcaaggcaacgagagggcgcatggacaggacctgggtacggct
ggtagttgtctacgtcgtttcagcacaatgcctttcatgttctgtgacatcaacaatgtt
tgcaacttcgcgtcccgtaatgactactcctattggctatccacaccccagcccatgccc
atgagcatggcactcatcaccggagaagccatcaaaccttacatcagtcggtgttctgtg
tgtgaagctccagccatggtgattgctatacacagccagaccattcaggtgccatcctgc
ccgctgaactggggaattctctggatcggttactccttcatgatgcacaccagtgcaggc
gccgagggttcgggtcaggctctcgcctctcccggctcctgtctggaggagttccgctcc
tctccgttcatcgagtgccacggtcgaggcacctgcaattattacaccaactcgtacagc
tactggctggccactgtggacgtgaatgaaatgttcagaaagccacagtcagagacactg
aaagctggaaacttgcagacccgtgtgagccgctgtattgtgtgtatgaagaggacgtaa
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