Squalius cephalus (European chub): 307155552
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Entry
307155552 CDS
T11930
Symbol
sin3ab
Name
(RefSeq) paired amphipathic helix protein Sin3a isoform 1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
scep
Squalius cephalus (European chub)
Pathway
scep04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
307155552 (sin3ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
scep03036
]
307155552 (sin3ab)
Chromosome and associated proteins [BR:
scep03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
307155552 (sin3ab)
REST complex
307155552 (sin3ab)
Heterochromatin formation proteins
Other heterochromatin formation proteins
307155552 (sin3ab)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
307155552
NCBI-ProteinID:
XP_079722389
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Position
3:complement(33786198..33811720)
Genome browser
AA seq
1262 aa
AA seq
DB search
MKRRLEDQDTVIGSQRRLPGGVDSFQHRVLNSASQSSLYETAPDNMQPSSSMQYSVSQTY
QLSMAQSSGGHGHTSSSAVHSGPHHHGPAVQPVGQGHSHATPAPAPTLGQQQFQRLKVED
ALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTF
LPPGYKIEVQTNDLVNVTTPGQIHHITPHGISVQNLPITQPAQHQTQPAAPTSTAAVVIP
SQPTPAKISKPMQSPALTPTSQPNPSIPSYASPRSPSAQSHTPISSSTAGSIPLQNNQPV
EFNHAISYVNKIKNRFQGQPEVYKSFLEILHTYQKEQRNAKEAGGNYTPTLTEQQVYAQV
AQLFKNQEDLLSEFGQFLPDANSSALLSKTTAEKAESVRIDRGGTVKRPQPNHKQSFNQN
GCQIRRHAGPPTTPPVKKKQKFLAKESMAEASKLGIGAESLFFEKVRKALRSSEAYDNFL
RCLVIFNQEVISRAELVQLVLPFLGKFPELFTWFKNFLGYRECAHIESFPKERATEGIAM
EIDYASCKRLGSSYRALPKSFQQPRCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ
YEEHIYRCEDERFELDVVLETNLATIRVLESVQKRLSRMSAEEQAKFRLDNTIGGSSEVI
HRKAIQRIYGDKAPDIIDGLKTNPAVSVPIVLKRLKIKEEEWREAQRGFNKIWREQNEKY
YLKSLDHQGINFKQNDTKVFRSKTLLNEIESLYDERQEQASEDNAAPPSGPHMNLMYEDS
QILEDAAALIIHHVKRQSGIHKDDKYKIKQIIYHFIPDMLFTRRGELSDVEEEEEEETAP
DEDGTKKHNGTTSAKSKLLFSHTAATQQKLSNCDDAYNLFYVNNNWYIFLRLHQILCSRL
LRIYGQAEKQIEEDSREREWERNVLGLKREKNDSPAIQLRLKEPMDIDVEDYYSAFLEMV
RNLLDGNMETSQYEDQLREMFTIHAYIAFTMDKLVQSIVRQLQHIVSDEICVQVTDLYLS
ECANKATGGSLSTQTSRGSAETSYQRKAEQLMSDENCFKLLFQKSKGTVQLAVELLDTEE
ENSDGPVDTERWPDYVERYLNTSSASPELREHLSQKPVFLPRNLRRIRKCQRGQEVQMRE
VKETAKKSSEGGEDSKMECMFKLNSYKMVYVFKSEDYMYRRTAQLRAHQSHQRVSTRLHQ
RFQVWLDRWRKDHVTSDMAAATHKWLMGEGREGLLPCRTVCEPKIVHFQNINKYKVTYGT
TL
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcgcttggaggatcaggacacagtgatcggctctcagcggcggctccctggg
ggtgtggacagctttcagcaccgcgtcctcaactctgcctcccagtcctccctctacgag
actgcaccggataacatgcagccgtcgtccagcatgcagtactctgtctcacagacctat
cagttgtcaatggcccagagttctgggggacatggtcacaccagcagttcagctgtgcac
agtgggcctcaccaccatgggccagctgtccagcctgtgggccaggggcactctcatgct
accccagcccctgccccaacgctgggccaacagcagtttcaacggcttaaggttgaagat
gctctttcctatctcgatcaagttaaacttcagtttggcaatcagccgcaggtctacaat
gacttcctggatatcatgaaggagttcaagtctcaaagcattgatacaccaggtgtgatc
agcagagtttcccagctcttcaaaggtcatccagacttaatcatgggcttcaacaccttc
ctgcctcctggctacaagattgaagttcagaccaatgatctggttaatgtgaccactcct
ggccaaatccaccacatcaccccgcatggtatctcagtccagaacctccccataacacag
ccagcacagcaccagacccagccagcagctcccaccagcactgctgccgtggtcatccct
agccagccaacccctgccaagatcagcaagccaatgcagtctcctgcacttaccccaacg
agccagcctaatccgtccatcccctcgtacgcctccccgcgctcgccctcggcccagtcc
cacactcccatcagtagcagcactgccggttcaatccctctacagaataaccagcctgta
gagttcaaccatgctatcagctacgtgaacaaaatcaagaaccgatttcagggccagcca
gaggtctacaaatccttcttggaaattttgcacacataccagaaggagcagcgtaatgct
aaggaggcagggggaaactacacacccactctcacggagcagcaggtgtatgctcaggtg
gcccagctcttcaagaaccaggaggacctcctttcagaattcggccagttcctgccagat
gcaaacagttcagcgttattgagtaagactacagccgagaaggctgaatctgtgcgtatt
gatcgtggagggacggtaaagagaccccagcctaaccataagcagagttttaatcagaat
ggctgtcagatccgcagacacgcggggccgcccactacaccccctgttaagaaaaagcaa
aagtttttggcaaaagaatcgatggctgaagccagcaaacttggaattggtgctgaatct
ctcttttttgaaaaggtgcggaaagcactgcggagttcagaggcttatgacaatttctta
cgctgtttggtcatcttcaatcaagaagtgatctcacgggctgaacttgtgcagttggtc
ttaccatttttggggaaattcccagagctttttacatggttcaagaacttcctcggctac
agagagtgtgcccatattgaaagctttcccaaagagcgagccactgaaggcattgcaatg
gaaattgattatgcgtcctgcaagagattgggctccagttatagagcccttcccaagagc
ttccagcagcctagatgtacaggcaggactccactgtgcaaagaggtgttgaatgatacg
tgggtgtcatttccatcctggtctgaggactcaacctttgtcagctccaaaaagacccag
tatgaagagcatatatatagatgtgaagatgagcgctttgagcttgatgtggttctggag
acaaacctcgccactatccgtgttctggagtctgttcaaaagaggctctcgcgcatgtct
gctgaggaacaagccaagttccgactggacaacaccattggaggctcctctgaggttatc
caccgtaaagctattcagaggatatatggtgacaaagctccagacatcatagatgggctc
aagaccaaccctgctgtctctgtacctattgtactcaaaaggctgaaaattaaagaagag
gagtggcgagaggctcagcgtggcttcaataagatctggagagaacagaatgagaagtat
tacctgaagtctttagatcaccaaggtattaacttcaaacagaatgacacaaaggtgttt
cgctccaagacgctgctcaatgaaatcgagtctctctatgatgagcgacaggagcaggct
tctgaagacaatgctgcccctccctcaggccctcacatgaacctcatgtacgaggacagc
cagatcctggaagacgcagctgctctcatcatccaccatgtcaagaggcagtctggcatc
cacaaagacgacaagtataaaatcaaacagatcatctaccatttcatccccgacatgctg
ttcacccgacgtggtgagctttctgatgtggaggaggaggaagaagaggagaccgcacca
gatgaagacgggactaaaaagcacaatgggacgacgtcagcaaagtctaagctcctcttc
agccatacagcagctacccagcagaaactgagtaactgtgacgatgcctacaacctcttc
tatgtcaacaataactggtacatcttcctccggctgcaccagatcctgtgctcccgactg
ctacggatctacgggcaggcggaaaaacagatcgaggaagactccagagagagggagtgg
gaaaggaacgtactgggattgaaaagagagaagaacgacagcccggccatccagctgcgt
ttgaaagaacccatggacatcgatgttgaagactactactctgccttcttagagatggtg
cgaaaccttctggatggcaacatggagacatctcaatacgaggaccagctgagggaaatg
tttaccatccatgcctacattgccttcaccatggacaaactcgtccagagtatagtgaga
cagctgcagcatatagtaagcgatgagatctgtgtacaggtgactgatctttaccttagc
gagtgtgccaacaaagccactggtgggtccctgtccacccaaacatccagaggcagtgct
gagacatcctaccagcgcaaagccgagcagctgatgtctgacgagaactgttttaagtta
ctgttccagaagtctaaggggactgtgcagctggctgtggagctgttggacacagaggaa
gagaactcggatggacctgtggatactgagcgctggcccgactacgtggagcgatatctg
aacaccagctcggcctctccagaactgcgagagcacctgtcccagaagcctgtgtttcta
cccaggaatctaaggcgaatccgcaagtgccagagaggtcaagaggtgcagatgagagag
gtcaaagaaacggccaagaaatcctccgagggtggcgaggactcgaagatggagtgcatg
tttaagctcaactcctacaagatggtgtacgtcttcaagtcggaggactacatgtaccga
cgcactgcgcagctgagagcgcatcagtctcaccagcgagtaagcactcgtctgcatcag
cgctttcaggtgtggctggacaggtggcggaaagatcacgtgacgagcgacatggcagcc
gccacgcacaagtggctgatgggagagggccgggaggggctactgccctgcagaacggtc
tgtgaacctaagatcgtccacttccagaacatcaacaaatataaagtcacctatggcact
acattgtaa
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