Squalius cephalus (European chub): 307156830
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Entry
307156830 CDS
T11930
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
scep Squalius cephalus (European chub)
Pathway
scep03018
RNA degradation
scep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307156830 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
307156830 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scep03019
]
307156830 (lsm8)
03041 Spliceosome [BR:
scep03041
]
307156830 (lsm8)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
307156830 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
307156830 (lsm8)
Spliceosome [BR:
scep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
307156830 (lsm8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Motif
Other DBs
NCBI-GeneID:
307156830
NCBI-ProteinID:
XP_079724633
LinkDB
All DBs
Position
4:complement(49446132..49447352)
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccgctcttgagagttacattaaccggacggttgccatcgtcacatcagatggc
aggatgattgtggggacgctaaagggtttcgatcagacaatcaacctcatcctggatgaa
agccacgagcgggtgttcagctcttcccagggagtggagcaggtggttctgggattgtat
attgtcagaggtgataatgtggctgtaattggtgaaatcgatgaagaaacagattctgcg
ctggatcttggaaacataagagcagaaccgctgaactctgtggtgcactga
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integrated database retrieval system
