Squalius cephalus (European chub): 307158065
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Entry
307158065 CDS
T11930
Symbol
arid2
Name
(RefSeq) AT-rich interactive domain-containing protein 2 isoform 1
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
scep Squalius cephalus (European chub)
Pathway
scep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
307158065 (arid2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scep03000
]
307158065 (arid2)
03021 Transcription machinery [BR:
scep03021
]
307158065 (arid2)
03036 Chromosome and associated proteins [BR:
scep03036
]
307158065 (arid2)
Transcription factors [BR:
scep03000
]
Eukaryotic type
Helix-turn-helix
ARID
307158065 (arid2)
Transcription machinery [BR:
scep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
307158065 (arid2)
Chromosome and associated proteins [BR:
scep03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
307158065 (arid2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
FOXP-CC
TSTD2_N
Motif
Other DBs
NCBI-GeneID:
307158065
NCBI-ProteinID:
XP_079726395
LinkDB
All DBs
Position
4:53898049..53921695
Genome browser
AA seq
1586 aa
AA seq
DB search
MANSTGKNLPEPRRKGQAFLDELRQFHHSRGSPFKKVPVVGGKELDLGALYVRVVSLGGF
AKVSDKNQWTELGEDFNFPRSCSNAAFVLKQYYLRYLEKYEKVHHFGEEDEEEQPGNPKH
LLPIGAIPTSYNYQQHTVSDYLRQSYGLSTDFIPPSDYNKLVLSLLSGLPNEVDFAINVC
TLLSNESKHAMQLEKEPKLVTLLLAHAGVFDDSLGSFSVVFGTDWREKTSRDFVRFWKDV
IEDNEVKDLISDKSSTPQIVFSGGSETRDVCTSLFHPARSVGIGDVEGQRVLQVAMILRN
LSFEEANIKLLAANRTCLRFLLLCAHCSFIQLRQLGLDTLGNVAGELQLDPVDFRTTHLM
FHTITKCLLSRDRFLKMRAMEILGNLSKVEDNGVLICEYVDQESYREVIALLTLPDIMLV
ISALEVLYQLAELGEITCSKISSVERSIDLLVRLVSVDLHTFGPDALTAVKLIEHQASSC
QVSEVRPQLVEHVPPPTQGTPGAVNRAPVQSTPPPGIVEVDGEKFTNQWLNAHFEVHPDC
SVSRSEMYSEYLATCSKMARGGVLTSNNFYKCLRTLFPNHTVKRVEDTRLSGQAQIHVVG
VRKRSIPLPVQLYYQQQASPAPVPKHEAPSETPQAQSALPPGVGVQLVRAPAPSLTAGPA
SPQVAFTMHGSSHANAPSAPAPVLTVPRLPMNPPGIATLPPCPPATAPVPIRPNDILKTA
MIQSSIPTASATPAVPNHSGTPTQQPLLHHAPLTLIQQGPAPQGHVFTGRVQGVCPSLAQ
QRSQDAVVLAPPQYVSAPCTSLMAGGQVVTVAGVTGTRVAFQNIAPKPAPQAQSPQPQQQ
TQQQSLVIVSPNQQPNTAFAPAIHQIVLTNPTSQTIQSSPSSPNTPIPNPAPAQPHTVSQ
MLSVKRQFQQAPPPPPPPTQPTSTESSLIKQLLLPKRGPSTPGGKLILPAPQVPAPASTR
APSPQVVYQVTNSGSVPPQPQLNVQLMQSPGAVPISILPGQIISTSTPGTLLQAAPNNQV
TFTVVPNSGFPGQVAQTPPTIGLQLTPPLPIAGATPIPPFRGDKIICQKEEEAKDATGLH
VHERKIEVMENNSVPDGSAKASNGESAEVDGPKLLNGRKFDSSLPPYHSGNSQAEATQAP
NGPQGGSEGPGKQTPCDPKKLMVNGVCDLERSDAGSHPSKNIPNHKASKHMGNGEVLSPQ
KAHGLTDSLTDTAKAEQAERLANGPSHGAEISNGPNSETLGVRQQHPPHNHSPPPHVSEP
PPANGTMESRPLKRPLEDGERGNSGIPTKMGVRIVTISDPNNAGNSATMVAVPAGADPST
VAKVAIENAAQQRPSVPSPLPETNAQQPVSVQTPPPVDQASPGANQSSPAPGANQSSPAP
ALSPEQARKPGQNFKCLWQACKRWFDTPSQVFYHAATQHGSKDVYPGQCKWEGCEPFPRQ
RLSFITHLQDKHCSREALIAALKLEEQTQGSNPNTSKSPPAAVSSPPPPRPQKALVNHPS
AALMALRRGSRNLVFRDFTDDKEGPMTKHIRLTAALTLKSIAKYSDCGRKLVRRHENHLC
VLALSTMEVSTTLAKCLYELARSLQA
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atggcgaactcgacggggaaaaacctccccgagccgcggaggaaaggacaggctttcctg
gacgagctgcggcagtttcaccacagcagaggatctccgtttaaaaaggttcccgtggtg
ggtgggaaggagctggacctgggtgctctctatgtgagagtggtgtctttagggggcttc
gcgaaggtgtcggacaagaaccagtggaccgaactgggcgaggatttcaatttccccagg
agttgctcgaatgctgcttttgttttgaaacagtactaccttcgatatttagagaagtat
gaaaaggtgcatcactttggagaggaagatgaagaggagcagccggggaatcctaaacat
ttgcttccgattggtgcaatacccacgtcatacaactaccagcaacacactgtatcagac
tatctccgccaaagctatgggctgtcgacggatttcatccctccatccgattacaacaaa
ctggtgctgtctctcctgtccggtctcccgaacgaggtggactttgccattaacgtgtgc
acgctgctgtccaacgagagcaagcatgccatgcagctcgaaaaagagcccaaactcgtc
acgctgctgctggcgcacgctggagtcttcgacgactcattaggcagcttttcagttgta
tttgggacagactggcgggagaaaacgtcacgagactttgtgaggttttggaaagatgtc
attgaagacaatgaagtcaaagatctcatctcagacaagagcagcacaccccaaattgtt
ttttcaggtggatcggagacgagggacgtctgcacttctctcttccacccggcacgaagc
gtaggcatcggagacgtcgagggccagcgggtgttgcaggtggcgatgatcctgaggaac
ttgtccttcgaggaggctaacatcaaactcctggcagctaatcgcacatgtctgcgcttc
ctcttgctgtgtgcgcactgctccttcatccagctacggcagctgggtctcgacacgctc
ggaaacgtcgccggagagcttcagttggatccagttgatttccgaacaacacatctgatg
tttcacaccatcacgaaatgtttgttgtcacgggatcgttttctcaaaatgagggccatg
gaaatcttggggaacctgagcaaagtggaggataacggcgtcctgatctgcgagtatgtg
gatcaggagtcgtaccgagaagtcattgccctcctgacgctgccggacatcatgctggtc
atctcggctctcgaggttttgtaccagctggccgagctcggggagatcacatgctcaaaa
atctcctccgtggagagaagcatagatcttctagtgcggttggtgtcagtggacctgcac
acgttcggacccgacgccctgacggcagtcaaactcatcgagcatcaggcctccagctgt
caggtctcagaggtccgaccgcagctcgtagagcacgttccccctcctacgcaaggcact
cctggcgctgtgaacagggcacctgtgcagtctacgcctccgcctgggattgtggaagta
gatggagagaaattcacaaatcagtggctaaatgctcatttcgaggttcatccagactgt
tcggtctctcgctcggagatgtactctgaatatctggcgacctgcagcaagatggcgcgg
ggtggtgtgctgacatccaacaacttctacaaatgcctgaggacgctgtttcctaatcac
acggtgaagcgtgttgaggacacacggctgagtgggcaggctcaaatacatgtggttggt
gtgaggaagaggtcgattcctcttcccgtccagctttattatcagcagcaggccagccct
gcaccagttcctaaacacgaagccccctcagaaacccctcaggcccagtcagcgctgccc
cctggtgtgggagtgcagcttgtccgggcaccagcaccaagccttactgccggcccggca
tcaccacaggtggccttcaccatgcacggatcatcacacgccaacgctcccagtgctcct
gcgccagtcctgactgttccacgactcccgatgaacccgccaggaatagcaacacttccc
ccttgccctccggccaccgccccagttcccatacgacccaatgacattctcaaaacagcc
atgatccagagctccataccaacagcatctgctacacctgcagttcccaaccacagcggc
acacctacccagcagcccttgctccatcacgcccctcttacactgatccagcaggggcca
gcgccccagggacacgtatttacaggtcgagtgcaaggagtttgtccttcattggcacag
caacgctcccaagacgctgtggttcttgcaccgcctcagtatgtgagtgcgccatgcact
tctctaatggcaggagggcaggttgtgaccgttgcaggcgtgacgggcactcgtgtcgca
tttcaaaacatcgcccccaaaccagcacctcaagctcagtcgccacaacctcaacagcaa
acgcaacagcaaagcctagtcatcgtcagtccaaatcaacaacccaacaccgcattcgcc
ccagccattcatcaaattgtgctaaccaaccccacttctcagaccatccagtcatctccc
tcttctccgaacacaccgatccccaaccctgccccggcccagccacacacagtcagccag
atgctgtccgtcaaacggcagtttcagcaggctccgccccctcctccacccccgacccaa
cctacctccacagaatccagtctgatcaaacagttactgcttccgaaacgtggtccttcc
acccccggcggaaaactcattctccccgctccgcaagttcccgctccggcgagcaccagg
gcgcccagtccgcaggtcgtataccaggtgaccaacagcggttcggtgccacctcaaccg
cagttgaacgtgcagctaatgcagagtcccggtgctgttcccatctcaatactaccaggc
cagatcatttccacctctactcctggtacactcctgcaggctgcgcccaacaaccaagtt
accttcactgttgtgccaaactctggcttccccggccaggtagcgcagactccgcccaca
atcggcctgcagttgactccgcctctgccaatcgctggagccacgcccattccacctttc
cgaggtgacaaaatcatctgccaaaaggaggaggaggccaaggatgccacgggattgcac
gtgcatgaacgcaagatcgaggtcatggagaacaattcggtccccgatggttcggccaaa
gccagcaatggggaatcggcggaggtggacggacctaagctgctcaacgggaggaaattc
gactcgagtctacctccatatcactcagggaacagccaagcagaggctacacaggcgccg
aacggcccccagggcggcagcgaaggccctggaaagcagacgccctgcgaccctaaaaag
ctaatggtgaacggggtgtgtgacttagagcgatcggacgctggttcccatccaagcaaa
aacattccaaatcataaggcttccaaacacatggggaacggtgaggtgttgtcgcctcag
aaagcgcacgggctcacggactctctcacggacactgccaaagcagagcaggcagaacgc
ctggccaacgggcccagccacggcgctgagatctccaacggcccaaactcagagacattg
ggcgtgaggcaacagcacccacctcataaccactccccacctccgcatgtttccgagccg
cctcccgctaacggcaccatggagagccggccgctgaagagaccgctggaggacggggaa
cgaggtaactccggcatccccacgaaaatgggtgtacggatagtgaccatcagcgacccc
aacaatgctggcaacagcgccaccatggtggccgtgccggcgggcgcagacccaagcaca
gtagcaaaagtagcaatagagaatgcagcacagcagagaccaagtgtgccctcgccgctt
cctgaaaccaatgctcagcagcctgtgtcagttcagactccgcctccagtggatcaggct
tcaccgggagccaatcagagttctccagcaccgggagccaatcagagttctccagcaccc
gccctctctccagagcaagcacgcaaacctggacagaactttaaatgtctgtggcaagca
tgcaaacggtggtttgacacgccatcacaggtgttttaccatgcagctacccaacatggc
agtaaagacgtgtacccagggcagtgcaaatgggagggctgtgaaccttttcctcgacag
agactatccttcatcacacacctgcaggataagcactgctcgagggaagcgctcatagct
gcactcaaactggaggagcaaacacaaggcagcaaccccaacacttccaagtctcctcca
gcggcggtcagcagtcctcctcctcccagaccacagaaagctctcgtcaaccaccccagc
gcagctctgatggctttacgtcgaggctccaggaaccttgtgttcagggacttcacagac
gataaagagggaccaatgaccaaacacattagactaactgctgccttaacattaaagagc
atcgccaagtactcggattgtggacggaagctggtgaggcggcatgagaatcatctgtgt
gtgttggcgctgagcactatggaggtctccaccacgctcgctaaatgcctttacgaactc
gcgcgctctctgcaggcctga
DBGET
integrated database retrieval system
