Squalius cephalus (European chub): 307158469
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Entry
307158469 CDS
T11930
Symbol
tia1l
Name
(RefSeq) cytotoxic granule-associated RNA binding protein 1, like isoform 1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
scep
Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scep03019
]
307158469 (tia1l)
03041 Spliceosome [BR:
scep03041
]
307158469 (tia1l)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
307158469 (tia1l)
Spliceosome [BR:
scep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
307158469 (tia1l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_MUD2_C
RRM_Nup35
Calcipressin
Nup35_RRM_2
RRM_ACIN1
XOO_2897-deam
Motif
Other DBs
NCBI-GeneID:
307158469
NCBI-ProteinID:
XP_079727176
LinkDB
All DBs
Position
5:36666083..36674014
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AA seq
343 aa
AA seq
DB search
MMMMDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMIIDTAGNDPYCFVEFYENR
HAAAALAAMNGRKILGKDMKVNWASMPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAP
FGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSA
PKPNNEASSSKHLSYEEVLNQSSPSNCTVYCGGIATGLSDQLMRQTFSPFGQIMEIRVFP
EKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMQMPQQNKPTYA
AQPYGQWGQSYGNGQQMGQYMPNGWQMPTYGVYGQAWNQQGYK
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggacgaggatcagcccaggacattgtatgtcgggaacctctccagggac
gtgacggaggccctcatcctgcaagtgttctcccagatcggaccctgcaaaagctgtaaa
atgatcattgatacggccggcaatgacccatattgctttgtggagttctatgagaacaga
cacgctgcagcagctctggctgccatgaacggcaggaagatcttaggaaaggatatgaaa
gttaactgggcctcaatgccaagcagccagaagaaagacacaagcaatcatttccatgtc
tttgtcggtgacctcagcccagaaatctcaacagatgatgtcagagcagcctttgctcca
tttggaaagatatctgatgcccgcgtggtgaaggacctggccacaggcaaatctaaagga
tatggtttcatctccttcattaataaatgggatgcagaaagtgccattcagcaaatgaat
ggccaatggctgggaggaagacagatcagaacaaactgggccacaaggaagccatccgct
cccaaaccaaacaatgaagcgtccagcagcaaacacttgtcctatgaggaggttctgaac
cagtcgagtcctagcaactgcaccgtgtattgtggtggcattgctactggcctttcagat
cagctgatgagacagactttctctccgttcgggcagataatggagatcagggttttccca
gagaaaggctactcatttgtgaggttcgattctcatgagggtgccgcccatgccatagtg
tctgtaaacgggacctgcattgagggccacactgtgaagtgctactggggaaaagaaaca
gctgatatgagatccatgcaacagatgcaaatgccccagcagaataaacccacctatgct
gcccaaccttacggacagtggggtcagtcatacggcaacggtcagcagatgggtcagtat
atgcccaacggctggcagatgcccacttacggcgtctacgggcaggcctggaatcagcag
ggatataaataa
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