Squalius cephalus (European chub): 307158641
Help
Entry
307158641 CDS
T11930
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
scep Squalius cephalus (European chub)
Pathway
scep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
307158641 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scep03019
]
307158641 (skic3)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
307158641 (skic3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_1
TPR_14
TPR_16
TPR_8
TPR_17
TPR_12
TPR_11
TPR_CcmH_CycH
CFAP70_TPR_C
TPR_9
CFAP70_mid_TPR
ANAPC3
TTC22_N
TPR_6
CABIN1_N
Fis1_TPR_C
TPR_MalT
HAT_Syf1_CNRKL1_N
TPR_Psidin_N
ARM_TT21_2nd
ARM_TT21_N
HAT_PRP39_N
ARM_TT21_C
TPR_21
TPR_15
Coatomer_E
CadC_C
Motif
Other DBs
NCBI-GeneID:
307158641
NCBI-ProteinID:
XP_079727516
LinkDB
All DBs
Position
5:20116129..20141011
Genome browser
AA seq
1568 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPDQAQ
IAYRKAAELEPEQLLAWQGLANLYEKGDQADFKAELPKIYQKLITLYETSDKAKCFEVSK
KLVEISQSEKNYLQVARVWRRLIQMKEGEEGVEDSELLELWREMTRLLQDTVEDQDNETQ
QHLISAFERALQMTVDVPGEAHRSLSQDYIKCLSKLPHEVAKLKEFCDATLSCYPTQSYP
LEALSEHYIKTGDCSEEAVRCFHRLSELDPNSSHAHFGLGIKACQDKKYEDAIKSIGLGL
KRMRSSIIGWYNLALAQLKMHKYSDSATSSSQGLKSSVGNSDDWTQKLQRLRLDALVRTG
RDQDADEALQILTQISDAKNDPVLLALKGRAHLQKGQTDEAFQVFAELLSSHPGSVEGLT
LKGLTHVAKEQLKQAEESFLEALSRSPDNGELYFLLGRLYWNMGEEIQRDRSKAHTHLLK
AAKLDPYLGSVFRFLGHYYRDVAKDQGRARGCYKRAFELDSSDAEAGAATVDLSMEQGDM
DLALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDWVCWECL
GEAYLNRRSFTAALKAFDKAHLLQPTSIYSLYQTAAIKQILGRFKEAASEYRQILEQEEY
VPALKGLGECLLALAKSALDDYLDGRAVDLIQNAIHYLFSAVKQRPDLSCLWKLLGDVCT
TCRTVSANRAKVLVPGALCGMDPPDQSHTLDQRQLLTVGERCFGHALKLMPEAPSLWCDL
GMNYYHQSRLFSCLYPEEDPQPLLEKALQCVKKAIMLDSANHKYWNALGVVAMAKGIENF
ALAQHSFIKSVKAEPNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIGQAL
IAETVGSYDTMDLFRHTTELSTHTEGVKGYAFWVCSTLLDRSNRDSELYLYNIVQMNAVS
AAQVALSKYTERIQTDPDAFIMLGYLNTHLQLKKQATEAYRRAVELLQASPHTDKLSFAL
RGYGRALSDDGQWEEAVRIYSSTPLEELHDLIGLALTCFKISRLPESIQAYEKALAVASS
EKEKACILTALALIQHMLGSLDHAKTLLFKCSMLKEPIPESLQCLCALGLVHGDVTLASA
TLTELLKLGEPVGGAVEEYCLLTCTLLALQGNFSGVHREASRAIHRNPGNPSLWALLSRL
VPQYCPNKASGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGEDRRCNALKTIQRA
VLLCPDDPAGWAGLMAACHTENTACLLTGSTPRREDLERAHMTLVSEKVKGLQGEDGLLA
QALEGWVLQQAVTGLKQSGQYDQAETLCSQVLSVSPEHPVVFLMLRQVQCERLLLSEAGN
CVPQAVLDQLSAAVMANLTSVSAWHWLAEVYRSQGLLAQASVAYRQSLQLASQLGDHGGK
TSSLLRLALLALTPCLAGVCVSEWKDLVLEASAEVLKMGNSPVALLFQALLQFSIKMGSR
ETRRLLERIVYGSASGSSETIASVACWYLLRHLHAKDDLELIDTLLLKATAAGDSRLVDF
HRRLYPSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtgaaagctgagctgaaaagtgcaagagaagccattaaaaataaa
gagtttaaagaagctttgaaacattgtaaggctgttctcaagcttgagaagaataactat
aatgcctgggtgttcattggagtggcagccacagagctgcagcagccggatcaggcacag
atcgcctacagaaaggccgctgaactggagccagagcaactgctggcatggcagggttta
gcaaatttgtacgaaaaaggtgaccaggcagatttcaaagccgagctgccaaagatttac
cagaaacttattacactgtatgaaacctcagacaaagcgaaatgtttcgaagtgagcaag
aagttggtggaaatctctcagtcggagaagaactatttacaggtggccagagtgtggcgg
aggttaatccagatgaaggagggagaggaaggggtggaggattcagagctgctggagctg
tggagggagatgaccagactcctgcaagacactgttgaggatcaggacaatgagactcag
cagcacctgatatcagcatttgaaagagctttgcaaatgacagtagatgtgcccggtgaa
gcccacaggagcctctcacaggattacattaaatgtctttctaagcttcctcatgaggtg
gccaagctaaaagagttttgtgatgccacactgtcctgctatccgacacaatcctaccct
ttagaggccctcagtgagcactacatcaaaacaggtgactgcagtgaggaagctgtccgt
tgtttccaccgtctctcagaactggatcctaacagctcacatgctcactttggtcttggc
attaaagcttgtcaggataaaaaatacgaggacgccatcaaaagtattggtctgggactg
aagcgaatgcgttcttccatcattgggtggtataatcttgctctggctcagctaaaaatg
cataaatactctgacagtgccacatcttccagccaagggctgaagtcgagtgtggggaat
tctgatgattggactcagaagctgcagaggttgagactagatgctctggtgaggacagga
agagaccaggatgctgatgaagctctacagatacttacacagatttcagatgccaaaaat
gacccagtgcttttagcgttgaaaggaagagctcacttgcaaaaaggccaaactgatgaa
gcatttcaggtttttgcagagctgctaagctctcacccaggatctgtggagggtctcact
ctgaaggggctgacgcatgttgctaaagaacagctcaaacaagctgaggagagctttctg
gaggctttatccagaagcccagataatggggagttatacttcttgctgggacgcctgtac
tggaacatgggagaggaaatacaaagggaccgtagcaaagcccatacacatttgctcaag
gctgctaaactggacccgtatcttggttcagtgtttcgtttcctgggtcattactacaga
gatgtggcaaaggatcagggcagagccagaggctgctataagagagcatttgagctggat
tcctctgatgcagaggctggagcggctactgtagatctcagcatggagcagggagacatg
gacttagctctgactgttctgcagtctgtgacagagagagccactcctggctctgctaaa
tgggcctggatgaggagaggtctctaccacctcaagattggccagcaccaacaggccatt
gcagatctgcaggcggcgttgagggctgatcctcaggactgggtgtgctgggaatgttta
ggtgaagcttacctgaaccgcaggagtttcacagctgctctgaaagcctttgataaagca
catcttcttcagcccacctcaatctatagcctctatcagacggccgccatcaaacagatc
ctgggccggtttaaagaggctgcctcagagtacaggcagatcttagagcaggaggaatat
gtgccggcactgaaaggtctgggtgaatgcttgttagccttggctaaaagtgcactggat
gactatcttgatggaagagctgtagatttgatacagaatgccatccattacctcttcagc
gctgtaaagcaaaggccagacctgtcgtgtctgtggaagttactaggtgatgtctgcacc
acctgcagaactgtgtctgcaaaccgagccaaagtgctggtacctggagctctatgtggc
atggatccacccgatcagagccatacactggaccagagacagctcctcactgtaggagaa
aggtgctttggtcatgcattgaaactcatgccggaggcccccagtctgtggtgtgacctc
ggcatgaactactaccaccaatccagactgttcagctgcctgtatcctgaggaggatccc
cagcctctgctggagaaagccctacagtgtgtgaagaaggcgatcatgctggacagtgct
aatcacaaatactggaatgcccttggggtcgttgccatggcaaaagggatagaaaacttt
gcacttgcacaacacagtttcatcaaatcagtaaaagctgagccaaataatgtggttgca
tggactaaccttggtgctttgtatctgaagaagggaaatatagagctctctcatgaagct
ttcaagattgctcagtcgctagagcccctctatgtgaactgctggatcggacaggccctc
attgctgagactgttggcagttatgacaccatggaccttttcagacacaccacagaactg
agcactcatactgagggagtgaagggttacgcgttctgggtttgctccacactgctggac
aggagcaacagagactcagagctatacctctacaacatagttcagatgaacgccgtctct
gctgcccaggtggctctcagcaagtacactgagaggattcagaccgaccctgacgccttc
atcatgctcggatacctgaacacacacctgcagctgaagaaacaggccactgaggcatat
cgcagagctgtcgagttgcttcaggcgtcccctcacacagacaagctcagctttgctctg
aggggttacggacgtgccctcagtgatgatgggcagtgggaagaagcagtgcgtatttat
tcctccacaccattggaggagctgcatgatctcatcgggctggcgctcacctgtttcaaa
atcagtcgcctgccagagagcattcaggcctatgagaaagcccttgcagttgcctctagt
gagaaagaaaaggcctgtatactcactgcactggccctgatacagcacatgctgggcagc
ttggatcatgccaaaacacttctcttcaagtgctccatgcttaaagagcccattccagag
agcctgcagtgtctctgtgctctgggtttggttcatggggacgtgactctggcaagtgct
acactcaccgagctgctgaaactgggggaacctgtaggaggcgctgtggaggagtactgt
ctgctcacttgcaccctgctggccctgcagggcaactttagcggtgtacatagggaggct
tctagggctatacacaggaacccagggaatccatctctctgggctcttctctccagactg
gtcccacagtactgccccaacaaagccagtggaggagctgtggctggcagtgtggcatgt
catgccagcttgacacttggaaagagggcgttgctgtacagtggagtgaatcagttggcc
tcaggccgccactctggtgaggacagaagatgcaacgctctgaaaacaatccagagagct
gtgctgctgtgcccagatgatcctgctggttgggcggggctaatggccgcctgtcacaca
gagaacactgcatgcttactcacaggctccacccctcgcagagaagatctggagagggcg
cacatgactctggtgtctgaaaaagtgaagggcctgcagggagaggacgggctcttggct
caggctctggagggctgggtgctgcagcaggccgtgactggactcaaacagagtggtcaa
tatgaccaggcagagactctttgctcccaggttctgagtgtctctccagagcatcctgtg
gtgttcctgatgttgaggcaggttcagtgtgagcgcctcctgctgtctgaggccggtaac
tgtgttcctcaagcggtgctggatcagctcagtgctgctgtcatggccaacctcacttct
gtgtccgcctggcactggttggcagaagtgtaccgctctcagggtctgctggctcaggcc
tctgtggcttatagacagagtcttcagctggcgtctcagctgggtgatcacggcgggaag
acgagcagcctgctccgactagccctgctggcgctcacgccatgtttggctggtgtctgt
gtctctgagtggaaggatctggtgttggaagccagtgctgaagtcttaaaaatgggcaac
tcgccagtagctttgctcttccaagccttactgcagttctccataaaaatgggctccagg
gaaacccgtcgcctgttggagaggattgtttatggttcagcctcaggcagctctgaaact
attgcgtcggtggcatgttggtacctcctgcgtcacctgcacgccaaagatgacctggag
ctgattgataccctgttgttgaaggctacagcagcaggagacagcagactggtggatttc
cacagacgcctttacccatccagctga
DBGET
integrated database retrieval system
